Browse Element(s) Details


Os.57457.1.S1_x_at

Description gb:D10411.1
DB_XREF= gi:218108
TID=Os.57457.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57457 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for glucosephosphate isomerase (338 gene), partial sequence
DEF=Rice mRNA for glucosephosphate isomerase (338 gene), partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g564609/11Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os06g145102/11Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os07g126701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein
LOC_Os03g56500Os.17985.1.S1_s_at11/113+32132503..32134032expressed protein
LOC_Os03g56500Os.27147.1.S1_at11/113+32132503..32134032expressed protein
LOC_Os03g56510OsAffx.25736.1.S1_at11/113+32135324..32136445F-box domain containing protein
LOC_Os03g56520OsAffx.3624.1.S1_at11/113+32139531..32140222hypothetical protein
LOC_Os03g56530OsAffx.22664.1.S1_at10/113+32140799..32146457retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005982biological_processstarch metabolism
GO:0006094biological_processgluconeogenesis
GO:0006096biological_processglycolysis
GO:0006952biological_processdefense response
GO:0009911biological_processpositive regulation of flower development
GO:0009536cellular_componentplastid
GO:0004347molecular_functionglucose-6-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57457.1.S1_x_at--402--10551Chr03:32117940..32117960 (21 bp)
TTCTCGGATATCCAGCTAGAGCAAT
LOC_Os03g56460
Os.57457.1.S1_x_at--478--1531Chr03:32117953..32118074 (25 bp)
AGCTAGAGCAATACTGCCCTATTCC
LOC_Os03g56460
Os.57457.1.S1_x_at--40--9891Chr03:32118061..32118085 (25 bp)
TACTGCCCTATTCCCAAGCACTTGA
LOC_Os03g56460
Os.57457.1.S1_x_at--1086--7731Chr03:32118226..32118250 (25 bp)
GGTGTCTCCATTGATGGTGTTCAAC
LOC_Os03g56460
Os.57457.1.S1_x_at--178--6251Chr03:32118238..32118262 (25 bp)
GATGGTGTTCAACTGCCCTTTGAGA
LOC_Os03g56460
Os.57457.1.S1_x_at--1134--3251Chr03:32118247..32118271 (25 bp)
CAACTGCCCTTTGAGAGTGGTGAAA
LOC_Os03g56460
Os.57457.1.S1_x_at--744--7353Chr06:8155785..8155809 (25 bp)
GTGAAATTGATTTTGGTGAACCTGG
LOC_Os06g14510
Os.57457.1.S1_x_at--99--3212Chr06:8155813..8155837 (25 bp)
CAATGGGCAACACAGCTTCTATCAA
LOC_Os06g14510
Os.57457.1.S1_x_at--714--1691Chr03:32118872..32118896 (25 bp)
AGCCAGCAACCTGTTTACTTGAAAG
LOC_Os03g56460
Os.57457.1.S1_x_at--1125--8991NONE
TGAATGTCCCATTTTCTTTTGCTCA
NONE
Os.57457.1.S1_x_at--349--3591NONE
CATTTTCTTTTGCTCAGCCTGATGG
NONE
Target Sequence 
TTCTCGGATATCCAGCTAGAGCAATACTGCCCTATTCCCAAGCACTTGAGNAATTTGCACCNGATATTCAGCAGCTTAGC
ATGGAGAGTAATGGAAAGGGTGTCTCCATTGATGGTGTTCAACTGCCCTTTGAGAGTGGTGAAATTGATTTTGGTGAACC
TGGNACCAATGGGCAACACAGCTTCTATCAANTAATCCATCAGGGAAGAGTTATTCCTTGTGATTTTNATCGGTGTCNGT
AAAAAGCCAGCAACCTGTTTACTTGAAAGGGGAAATTTTGAGCAATCATTGNCGGANTTGAATGTCCCATTTTCTTTTGC
TCAGCCTGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57457.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis