Browse Element(s) Details


Os.9548.2.S1_s_at

Description gb:NM_191594.1
DB_XREF= gi:34910271
GEN=OSJNBa0089K24.23
TID=Os.9548.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.23 (OSJNBa0089K24.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0089K24.23 (OSJNBa0089K24.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0795011/11glutaredoxin-related protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07890Os.25117.1.A1_at11/111+3814848..3815560expressed protein
LOC_Os01g07900Os.50446.1.S1_at10/111+3815888..3816584expressed protein
LOC_Os01g07910Os.53199.1.S1_at10/111+3816979..3821315NADH-cytochrome b5 reductase, putative, expressed
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein
LOC_Os01g07980Os.9859.4.S1_x_at11/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.4.S1_at10/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.3.S1_x_at3/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07990OsAffx.31174.1.S1_at11/111+3863762..3867926expressed protein
LOC_Os01g07990OsAffx.31174.3.S1_x_at11/111+3863762..3867926expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006812biological_processcation transport
GO:0005739cellular_componentmitochondrion
GO:0005489molecular_functionelectron transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9548.2.S1_s_at--497--1011Chr01:3839855..3839879 (25 bp)
AGGTTGGTGTCGACCGCTCTCATGA
LOC_Os01g07950
Os.9548.2.S1_s_at--1130--10111Chr01:3840735..3840759 (25 bp)
TTAGGAACTACTCACCAGGACTTGG
LOC_Os01g07950
Os.9548.2.S1_s_at--1007--9711Chr01:3840785..3840809 (25 bp)
TCAAGTTCAACACGAGTAGCTGCTG
LOC_Os01g07950
Os.9548.2.S1_s_at--375--6971Chr01:3840800..3840824 (25 bp)
GTAGCTGCTGATCCTGATACACATC
LOC_Os01g07950
Os.9548.2.S1_s_at--288--2091Chr01:3840820..3840844 (25 bp)
ACATCAAGATTTCCAGCCTACAAGC
LOC_Os01g07950
Os.9548.2.S1_s_at--410--5971Chr01:3841032..3841056 (25 bp)
GAGAACCCAGTCTTGATCTACATGA
LOC_Os01g07950
Os.9548.2.S1_s_at--218--2871Chr01:3841056..3841080 (25 bp)
AAGGGTTTTCCTGAGTCTCCTATGT
LOC_Os01g07950
Os.9548.2.S1_s_at--596--711Chr01:3841217..3841239 (23 bp)
ATGATGTCCCTATCAGTGCTAGAGA
LOC_Os01g07950
Os.9548.2.S1_s_at--259--2571Chr01:3841777..3841801 (25 bp)
AACTGGCCTACGTTTCCACAAATAT
LOC_Os01g07950
Os.9548.2.S1_s_at--254--931Chr01:3841853..3841877 (25 bp)
AGGCAAGTGAGCTTATTGTCCCCAG
LOC_Os01g07950
Os.9548.2.S1_s_at--390--10231Chr01:3841866..3841890 (25 bp)
TATTGTCCCCAGGTTTTATTACCAG
LOC_Os01g07950
Target Sequence 
AGGTTGGTGTCGACCGCTCTCATGAGAGGGCTCGTGAGATCGAGCCGCGCGCCGAGAGTAGCTTTTAGGAACTACTCACC
AGGACTTGGTGGTGATTCTAGAGGAAGTGGGGACTCAAGTTCAACACGAGTAGCTGCTGATCCTGATACACATCAAGATT
TCCAGCCTACAAGCAAAAGTTCCAACATGTCTTTTGATGACATTGTTGCTCAGGATATCAAAGAGAACCCAGTCTTGATC
TACATGAAGGGTTTTCCTGAGTCTCCTATGTGTGGATTCAGTGCATTGGCAGTTAAAGTCCTCAAGCTATATGATGTCCC
TATCAGTGCTAGAGATATTTTGGGAGACCTCAAGCTCAAAGAGTGTGTCAAAGCCCACACCAACTGGCCTACGTTTCCAC
AAATATTTATCAAAGGAGAGTTTGTTGGGGGGTCTGATATCATATTAGATATGCATCAGGCAAGTGAGCTTATTGTCCCC
AGGTTTTATTACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9548.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis