Browse Element(s) Details


OsAffx.16111.1.S1_at

Description gb:NM_196215.1
DB_XREF= gi:37533789
TID=OsAffx.16111.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNAa0019N10.17), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2431011/11retrotransposon protein, putative, unclassified
LOC_Os04g195402/11retrotransposon protein, putative, unclassified
LOC_Os05g202902/11retrotransposon protein, putative, unclassified
LOC_Os10g152501/11retrotransposon protein, putative, unclassified
LOC_Os07g225501/11retrotransposon protein, putative, unclassified
LOC_Os05g209401/11retrotransposon protein, putative, unclassified
LOC_Os12g150301/11retrotransposon protein, putative, unclassified
LOC_Os10g247001/11retrotransposon protein, putative, unclassified
LOC_Os12g196501/11retrotransposon protein, putative, unclassified
LOC_Os12g111301/11retrotransposon protein, putative, unclassified
LOC_Os02g252601/11retrotransposon protein, putative, unclassified
LOC_Os12g113001/11retrotransposon protein, putative, unclassified
LOC_Os12g100601/11retrotransposon protein, putative, unclassified
LOC_Os02g211001/11retrotransposon protein, putative, unclassified
LOC_Os04g217501/11retrotransposon protein, putative, unclassified
LOC_Os08g286301/11retrotransposon protein, putative, unclassified
LOC_Os12g202701/11retrotransposon protein, putative, unclassified, expressed
LOC_Os05g083101/11retrotransposon protein, putative, unclassified
LOC_Os08g292401/11retrotransposon protein, putative, unclassified
LOC_Os08g227101/11retrotransposon protein, putative, unclassified
LOC_Os11g359201/11retrotransposon protein, putative, unclassified
LOC_Os02g297601/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g228501/11retrotransposon protein, putative, unclassified, expressed
LOC_Os07g137501/11retrotransposon protein, putative, unclassified
LOC_Os09g029401/11retrotransposon protein, putative, unclassified
LOC_Os11g188101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24260NANA10+12102435..12103103hypothetical protein
LOC_Os10g24270Os.24831.3.S1_s_at11/1110+12103788..12105912retrotransposon protein, putative, unclassified
LOC_Os10g24270Os.24831.1.S1_x_at10/1110+12103788..12105912retrotransposon protein, putative, unclassified
LOC_Os10g24270Os.24831.3.S1_x_at5/1110+12103788..12105912retrotransposon protein, putative, unclassified
LOC_Os10g24270Os.24831.4.S1_x_at1/1110+12103788..12105912retrotransposon protein, putative, unclassified
LOC_Os10g24280OsAffx.31869.3.S1_x_at2/1110+12107474..12107989retrotransposon protein, putative, unclassified
LOC_Os10g24280OsAffx.31869.5.S1_x_at1/1110+12107474..12107989retrotransposon protein, putative, unclassified
LOC_Os10g24290OsAffx.31869.1.S1_at5/1110+12111579..12112694retrotransposon protein, putative, unclassified
LOC_Os10g24290OsAffx.31869.3.S1_x_at4/1110+12111579..12112694retrotransposon protein, putative, unclassified
LOC_Os10g24290OsAffx.31869.4.S1_at2/1110+12111579..12112694retrotransposon protein, putative, unclassified
LOC_Os10g24290OsAffx.31869.5.S1_x_at2/1110+12111579..12112694retrotransposon protein, putative, unclassified
LOC_Os10g24290OsAffx.31869.4.S1_x_at1/1110+12111579..12112694retrotransposon protein, putative, unclassified
LOC_Os10g24300NANA10+12116732..12117523hypothetical protein
LOC_Os10g24310OsAffx.16111.1.S1_at11/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_at6/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.16111.2.S1_x_at4/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22699.1.S1_x_at2/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310OsAffx.22896.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24310Os.51348.1.S1_x_at1/1110+12118988..12127944retrotransposon protein, putative, unclassified
LOC_Os10g24320NANA10+12129267..12130807hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_x_at11/1110+12131141..12131983hypothetical protein
LOC_Os10g24330OsAffx.18377.1.S1_at8/1110+12131141..12131983hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_at9/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.1.S1_x_at8/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_at7/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.2.S1_x_at4/1110+12142372..12143487hypothetical protein
LOC_Os10g24340OsAffx.28610.3.S1_at3/1110+12142372..12143487hypothetical protein
LOC_Os10g24340Os.4760.1.S1_at1/1110+12142372..12143487hypothetical protein
LOC_Os10g24350OsAffx.8183.1.S1_at11/1110+12144589..12145302transposon protein, putative, unclassified
LOC_Os10g24360OsAffx.20409.1.S1_at11/1110+12147842..12148734hypothetical protein
LOC_Os10g24360OsAffx.23458.1.S1_x_at1/1110+12147842..12148734hypothetical protein
LOC_Os10g24370Os.46493.2.S1_x_at10/1110+12149339..12156009expressed protein
LOC_Os10g24370Os.3577.1.S1_x_at1/1110+12149339..12156009expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16111.1.S1_at--226--82311Chr12:11829722..11829946 (25 bp)
GGCAATGCAGGTTACAATCAGATTT
LOC_Os12g20270
OsAffx.16111.1.S1_at--274--64910Chr11:10653952..10653972 (21 bp)
GATAGCTTTCAGATGTCCTGGTGCA
LOC_Os11g18810
OsAffx.16111.1.S1_at--712--7612Chr12:11455103..11455122 (20 bp)
GGGAATAGAAAACCACATAGCCGAT
LOC_Os12g19650
OsAffx.16111.1.S1_at--117--2811Chr10:12123380..12123404 (25 bp)
AAGATTCAACCTCCGAAGGATAAGA
LOC_Os10g24310
OsAffx.16111.1.S1_at--611--6651Chr10:12123418..12123442 (25 bp)
GTTGATCAGCAAGACAAATTTCATT
LOC_Os10g24310
OsAffx.16111.1.S1_at--594--2251Chr10:12123433..12123457 (25 bp)
AAATTTCATTAGAAGGTTCATCTCT
LOC_Os10g24310
OsAffx.16111.1.S1_at--608--7892Chr10:12123447..12123471 (25 bp)
GGTTCATCTCTAATTTATCTGGCAG
LOC_Os10g24310
OsAffx.16111.1.S1_at--1097--10151Chr10:12123462..12123486 (25 bp)
TATCTGGCAGGATAGAGCCTTTCAC
LOC_Os10g24310
OsAffx.16111.1.S1_at--461--7951Chr10:12123471..12123495 (25 bp)
GGATAGAGCCTTTCACACCATTGTT
LOC_Os10g24310
OsAffx.16111.1.S1_at--641--55511Chr12:5327897..5327921 (25 bp)
GAAAGCCGATCAAGAATTCACCTGG
LOC_Os12g10060
OsAffx.16111.1.S1_at--224--7951Chr10:12123606..12123720 (25 bp)
GGATACCTTTCAGGAGGCAAGGTAC
LOC_Os10g24310
Target Sequence 
GGCAATGCAGGTTACAATCAGATTTTTATGGCAGAAGAAGATATTCATAAGATAGCTTTCAGATGTCCTGGTGCAATCGG
CTTGTTCGAGTGGGTTGTGATGACTTTCGGCTTGAAAAGTGCTGGAGCTACATATCAGAGGGCTATGAATTACATTTTCC
ACGATCTAATCGGCTGGTTAGTTGAAGTTTATATTGATGATGTGGTTGTTAAGTCAAAGGGAATAGAAAACCACATAGCC
GATTTGAGGGGGATTGAGATAACTCAAAGGAGTATCAATGCAATCAAGAAGATTCAACCTCCGAAGGATAAGAAGAAGTT
GCAGAAGTTGATCAGCAAGACAAATTTCATTAGAAGGTTCATCTCTAATTTATCTGGCAGGATAGAGCCTTTCACACCAT
TGTTGAGATTGAAAGCCGATCAAGAATTCACCTGGGGGGCAGAGCAACAGAAAGCTTTGGACAACATTAAAGAATATCTT
AGTTCTCCTCCAGTTTTAATTCCTCCACAGAAGGGGATACCTTTCAGGAGGCAAGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis