Browse Element(s) Details


OsAffx.18381.1.S1_at

Description tigr:9638.m02076
TID=OsAffx.18381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2471010/11expressed protein
LOC_Os03g033401/11hypothetical protein
LOC_Os04g095101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24680NANA10+12349157..12349750transposon protein, putative, unclassified
LOC_Os10g24690Os.36118.1.S1_at11/1110+12358036..12359032expressed protein
LOC_Os10g24700OsAffx.31828.1.S1_at2/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.20615.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.10371.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.16111.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.20604.2.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.27937.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24710OsAffx.18381.1.S1_at10/1110+12374402..12379530expressed protein
LOC_Os10g24710OsAffx.22250.2.S1_x_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710OsAffx.28492.1.S1_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710Os.46610.1.A1_x_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710Os.38751.1.A1_at1/1110+12374402..12379530expressed protein
LOC_Os10g24720OsAffx.20650.2.S1_at11/1110+12381939..12383147retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g24730OsAffx.22947.3.S1_x_at11/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.2.S1_x_at8/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.1.S1_x_at6/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.5.S1_x_at3/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24740NANA10+12399027..12399683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24750NANA10+12400358..12401889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24760OsAffx.8172.1.S1_at6/1110+12402301..12403986retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18381.1.S1_at--528--8251Chr10:12376124..12376148 (25 bp)
GGCACGACGACGAACAACGACAGGA
LOC_Os10g24710
OsAffx.18381.1.S1_at--664--971Chr10:12376103..12376127 (25 bp)
AGGAGACGGCCGACAACGAGATTGA
LOC_Os10g24710
OsAffx.18381.1.S1_at--1056--1051NONE
AGGTGGCGGCACAGGCTCGTCATTC
NONE
OsAffx.18381.1.S1_at--1087--9451Chr10:12374846..12374870 (25 bp)
TCTCCAACTCCTATTTCCGAAGCAA
LOC_Os10g24710
OsAffx.18381.1.S1_at--1016--191Chr10:12374834..12374858 (25 bp)
ATTTCCGAAGCAAGTGAGCACACCC
LOC_Os10g24710
OsAffx.18381.1.S1_at--469--5951Chr10:12374819..12374843 (25 bp)
GAGCACACCCAATTGGCCGCAGGAA
LOC_Os10g24710
OsAffx.18381.1.S1_at--581--5372Chr03:1408168..1408645 (25 bp)
GAAGAAGCAACCACGAGCACAGCCT
LOC_Os03g03340
OsAffx.18381.1.S1_at--649--10851Chr10:12374587..12374611 (25 bp)
TTGGTACCTCTAGCTGACGATGTGA
LOC_Os10g24710
OsAffx.18381.1.S1_at--106--1791Chr10:12374557..12374581 (25 bp)
ACCCTGCTAGACATTTCAAAACGAC
LOC_Os10g24710
OsAffx.18381.1.S1_at--196--5212Chr04:5071709..5071728 (20 bp)
GAATTCCATGATAAAATCCCAGACA
LOC_Os04g09510
OsAffx.18381.1.S1_at--700--9291Chr10:12374457..12374481 (25 bp)
TCCCAGACAAGTTAGACGATGCCAT
LOC_Os10g24710
Target Sequence 
GGCACGACGACGAACAACGACAGGAGACGGCCGACAACGAGATTGAAGCGGCGACGGGCTCGGCTTGACGGCGTCGGTGG
CGCTTCGGCGACGAGCGGCAACAACGGAGGGGTGGACGGGCTTCTCCTCGGTGCTGCGATGCCGAGGGAGGTGGCGGCAC
AGGCTCGTCATTCTCCAACTCCTATTTCCGAAGCAAGTGAGCACACCCAATTGGCCGCAGGAAGTCATCACATGGAGGAA
GAAGAAGAAGTAATGGCACCAGCTCCTGCTATCCCCGTCTTAGCCGATATGTTTTCCTTTGACATCCGGCAATTCATGGA
CAAAGAAGAAGCAACCACGAGCACAGCCTTGGTACCTCTAGCTGACGATGTGAAAGCAACCCTGCTAGACATTTCAAAAC
GACTAGAAGGCTCTTTGGAAACTCTGGTAACCAGCTGTGGGTCTATTAGAGATAGATTCCACGAATTCCATGATAAAATC
CCAGACAAGTTAGACGATGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis