Browse Element(s) Details


OsAffx.21546.1.S1_s_at

Description gb:NM_191714.1
DB_XREF= gi:34910511
GEN=P0456F08.31
TID=OsAffx.21546.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0456F08.31 (P0456F08.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5149011/11hypothetical protein
LOC_Os01g514403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51410Os.26642.1.S1_a_at11/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51410OsAffx.23425.1.S1_at1/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51420OsAffx.11559.1.S1_at11/111+29895394..29898137Calcineurin B-like protein 10, putative, expressed
LOC_Os01g51430Os.1597.1.S1_at11/111+29899503..29902503expressed protein
LOC_Os01g51430Os.9355.1.S1_at1/111+29899503..29902503expressed protein
LOC_Os01g51440OsAffx.21546.1.S1_s_at3/111+29905381..29905830hypothetical protein
LOC_Os01g51450OsAffx.28030.1.S1_s_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.1.S1_x_at11/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51450OsAffx.28030.2.S1_x_at4/111+29907562..29910021Nucleosome assembly protein containing protein
LOC_Os01g51460Os.30797.1.S1_at11/111+29910723..29911423expressed protein
LOC_Os01g51460OsAffx.23746.1.S1_s_at1/111+29910723..29911423expressed protein
LOC_Os01g51470OsAffx.23745.1.S1_at9/111+29912749..29913252hypothetical protein
LOC_Os01g51480NANA1+29913967..29914471hypothetical protein
LOC_Os01g51490OsAffx.21546.1.S1_s_at11/111+29916096..29917190hypothetical protein
LOC_Os01g51500OsAffx.9361.1.S1_at11/111+29919562..29920194hypothetical protein
LOC_Os01g51510OsAffx.23746.1.S1_s_at11/111+29920574..29921173hypothetical protein
LOC_Os01g51520OsAffx.9359.1.S1_at9/111+29924264..29924770hypothetical protein
LOC_Os01g51530Os.48273.1.A1_s_at4/111+29925871..29927992expressed protein
LOC_Os01g51540Os.41883.1.S1_at10/111+29931973..29933232Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os01g51550OsAffx.9358.1.S1_x_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.1.S1_at11/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550OsAffx.9358.3.S1_at10/111+29937791..29941503Peroxidase family protein
LOC_Os01g51550Os.52782.1.S1_at1/111+29937791..29941503Peroxidase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21546.1.S1_s_at--1162--7091Chr01:29916663..29916687 (25 bp)
GTCAGAGACGTGCAACCGCCAGCGC
LOC_Os01g51490
OsAffx.21546.1.S1_s_at--44--1671Chr01:29916643..29916667 (25 bp)
AGCGCCGCAAGATCTTCGTCGTCAA
LOC_Os01g51490
OsAffx.21546.1.S1_s_at--548--2811Chr01:29916635..29916659 (25 bp)
AAGATCTTCGTCGTCAACCTGCTAT
LOC_Os01g51490
OsAffx.21546.1.S1_s_at--539--7211Chr01:29916626..29916650 (25 bp)
GTCGTCAACCTGCTATATGAATTCA
LOC_Os01g51490
OsAffx.21546.1.S1_s_at--571--9352Chr01:29905517..29905541 (25 bp)
TCGACGTCACACTTCACGTCAACAA
LOC_Os01g51440
OsAffx.21546.1.S1_s_at--79--8612Chr01:29905575..29905599 (25 bp)
TGGTGAGCTACGAGGGCTTCACCGT
LOC_Os01g51440
OsAffx.21546.1.S1_s_at--238--10152Chr01:29905726..29905750 (25 bp)
TATCGGCGCCATGCAGCTGGAGGTC
LOC_Os01g51440
OsAffx.21546.1.S1_s_at--870--991Chr01:29916158..29916182 (25 bp)
AGGATGGATGAAGCGCAACTGCCGA
LOC_Os01g51490
OsAffx.21546.1.S1_s_at--238--671Chr01:29916151..29916175 (25 bp)
ATGAAGCGCAACTGCCGAACACGGC
LOC_Os01g51490
OsAffx.21546.1.S1_s_at--918--5491Chr01:29916135..29916159 (25 bp)
GAACACGGCGCATTGCTCGGTGTTG
LOC_Os01g51490
OsAffx.21546.1.S1_s_at--73--4952Chr01:3311409..3311626 (25 bp)
GCATTGCTCGGTGTTGGCTTTGCAG
NONE
Target Sequence 
GTCAGAGACGTGCAACCGCCAGCGCCGCAAGATCTTCGTCGTCAACCTGCTATATGAATTCANNNNTNNNNTTNTNNTNN
NNCNANGNNNGTATCACGNNTTNTACGACTTCCCATCCGAGTTNTCCGTCCAGATNACGGCCANCCGCGGCCTNGACGAC
GCGGCGCCGGCGNCTCCGACGATCATCTCCCCTGCNATCGACGTCACACTTCACGTCAACAACCGGCGNGGCACGGCGAG
ATGCTACCGCGGCGGNNNNNNNNTGGTGAGCTACGAGGGCTTCACCGTCGCGTCCGGCACCGTGCCGGGCTTCTGCGNGC
NGGGGAAGAGGGCACNGGAGGTGCCGTTCCTGGCGTCGGCCGACGGCGTGGGTCTNCCTCAGCGGCTTNGCGNNCGCATG
GCNNTGGAGNGGCGTATCGGCGCCATGCAGCTGGAGGTCGAGGTGAAGCTGTTCGGGCGCGACGNNNGCGGCACGGCGCC
CAGGCCGACGTGGATGTCGTGCGGGCTGAGGATGGATGAAGCGCAACTGCCGAACACGGCGCATTGCTCGGTGTTGGCTT
TGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21546.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis