Browse Element(s) Details


OsAffx.22439.1.S1_at

Description tigr:9635.m01198
TID=OsAffx.22439.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1222011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12180OsAffx.22708.5.S1_x_at7/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.1.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.2.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.5.S1_at3/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.3.S1_x_at9/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.4.S1_x_at8/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12200Os.10276.1.S1_at11/117+6821013..6823997ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12210OsAffx.22440.1.S1_at11/117+6832221..6833291hypothetical protein
LOC_Os07g12220OsAffx.22439.1.S1_at11/117+6839803..6843124expressed protein
LOC_Os07g12230OsAffx.22438.1.S1_x_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.22438.1.S1_at11/117+6846320..6851694hypothetical protein
LOC_Os07g12230OsAffx.8676.1.S1_at4/117+6846320..6851694hypothetical protein
LOC_Os07g12230Os.10031.1.S1_at1/117+6846320..6851694hypothetical protein
LOC_Os07g12240OsAffx.28409.2.S1_s_at11/117+6854921..6855484EF hand family protein
LOC_Os07g12240OsAffx.28409.1.S1_at7/117+6854921..6855484EF hand family protein
LOC_Os07g12250Os.14565.1.S1_at11/117+6862983..686512660S ribosomal protein L24, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22439.1.S1_at--690--8371Chr07:6841365..6841389 (25 bp)
GGCGTTCTTGTGATCAACCTGGTAA
LOC_Os07g12220
OsAffx.22439.1.S1_at--1140--9731Chr07:6841387..6841411 (25 bp)
TAATTGGGCTCTTTGCTGTTGTTGC
LOC_Os07g12220
OsAffx.22439.1.S1_at--1162--6951Chr07:6841420..6841444 (25 bp)
GTAGCAGCCAGACACTTGGTCGGAC
LOC_Os07g12220
OsAffx.22439.1.S1_at--371--7191Chr07:6841438..6841462 (25 bp)
GTCGGACATATGCAGTCCTTCTGTT
LOC_Os07g12220
OsAffx.22439.1.S1_at--213--10611Chr07:6841456..6841480 (25 bp)
TTCTGTTCTTCGCTATTGTTCTTGA
LOC_Os07g12220
OsAffx.22439.1.S1_at--1028--6811Chr07:6841490..6841514 (25 bp)
GTTTATTCTCTTCTCACATGCTATA
LOC_Os07g12220
OsAffx.22439.1.S1_at--571--7831Chr07:6842096..6842120 (25 bp)
GGTCAACTTTTCGTTTTATCACTCA
LOC_Os07g12220
OsAffx.22439.1.S1_at--611--6731Chr07:6842319..6842343 (25 bp)
GTTCTATTTATGATCCTGCCTACTA
LOC_Os07g12220
OsAffx.22439.1.S1_at--828--9871Chr07:6842339..6842363 (25 bp)
TACTATTCTTCTCTTTTCGCGGATG
LOC_Os07g12220
OsAffx.22439.1.S1_at--1161--1091Chr07:6842721..6842745 (25 bp)
AGTGGATCAACATCTGCGGGTCAAT
LOC_Os07g12220
OsAffx.22439.1.S1_at--633--4671Chr07:6842736..6842760 (25 bp)
GCGGGTCAATCTCCACGACTTAAAT
LOC_Os07g12220
Target Sequence 
GGCGTTCTTGTGATCAACCTGGTAATTGGGCTCTTTGCTGTTGTTGCAATTGAGAGTAGCAGCCAGACACTTGGTCGGAC
ATATGCAGTCCTTCTGTTCTTCGCTATTGTTCTTGATGTTGCTTGGTTTATTCTCTTCTCACATGCTATANNNAATATTA
CTCCTGAAGAGAAGTATGGTCAACTTTTCGTTTTATCACTCAAACTAGCGTTGTGGATGCAAATTATTGGGTTTTCAATG
TATAGGCTGGGGGTTTCATCAAGCACCCCAACATATCATGAAGTAAACTATGATGGAAGAAATAGTTTCTTGAGCCCAAG
ATCAAGTTCAGTTAGACGAAATTCCATGGCTGATGATATATTGGGTGGTTCTATTTATGATCCTGCCTACTATTCTTCTC
TTTTCGCGGATGTCCGAAACAACACATGCACTCATCAGGGTGATAAACAAAGTGGTAGTAATGATAGTGGATCAACATCT
GCGGGTCAATCTCCACGACTTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis