Browse Element(s) Details


OsAffx.22827.1.S1_x_at

Description gb:NM_184058.1
DB_XREF= gi:34895217
GEN=OJ1212_B09.5
TID=OsAffx.22827.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) receptor-like kinase (OJ1212_B09.5), mRNA.
PROD=receptor-like kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0235011/11receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g023201/11TAK14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02380NANA1+753696..758852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02390Os.1849.1.S1_at11/111+763983..766475TAK14, putative, expressed
LOC_Os01g02390OsAffx.10882.2.S1_x_at3/111+763983..766475TAK14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22827.1.S1_x_at--965--10671Chr01:740161..740185 (25 bp)
TTGCCAAACTGTACCCACGGGATAA
LOC_Os01g02350
OsAffx.22827.1.S1_x_at--702--6811Chr01:740134..740158 (25 bp)
GTTTTATGCCAGTTAGCGCTGCACG
LOC_Os01g02350
OsAffx.22827.1.S1_x_at--981--3411Chr01:739982..740006 (25 bp)
CAGAACATGTCGAGCTCAAGCCAGT
LOC_Os01g02350
OsAffx.22827.1.S1_x_at--675--4831Chr01:739969..739993 (25 bp)
GCTCAAGCCAGTCATATTATCCATC
LOC_Os01g02350
OsAffx.22827.1.S1_x_at--452--8631Chr01:739943..739967 (25 bp)
TGGGTGTATAATCAGCTGGTTCAAC
LOC_Os01g02350
OsAffx.22827.1.S1_x_at--649--7711Chr01:739911..739935 (25 bp)
GGGTGAGATTGCCAATGCCTTCAAT
LOC_Os01g02350
OsAffx.22827.1.S1_x_at--802--7412Chr01:739861..739885 (25 bp)
GTGTTGTTGGTCTACATTGCATTCA
LOC_Os01g02350
OsAffx.22827.1.S1_x_at--1147--2971Chr01:739836..739860 (25 bp)
AATGAAGTCTCATGATCGTCCAACG
LOC_Os01g02350
OsAffx.22827.1.S1_x_at--435--731Chr01:739780..739804 (25 bp)
ATGTTGGTGGTCTGCAGCTGCCTTC
LOC_Os01g02350
OsAffx.22827.1.S1_x_at--62--711Chr01:739738..739762 (25 bp)
ATGATGAACCCCTGCCACTGCTAGT
LOC_Os01g02350
OsAffx.22827.1.S1_x_at--588--1971Chr01:739722..739746 (25 bp)
ACTGCTAGTGGATTCTTGCCGTTTC
LOC_Os01g02350
Target Sequence 
TTGCCAAACTGTACCCACGGGATAACAGTTTTATGCCAGTTAGCGCTGCACGAGGAACAGTAGGTTATATTGCTCCTGAG
ATGATATCTCGGAGCTTTGGTATCATATCTAGCAAATCTGATGTTTATAGCTTTGGAATGCTTCTGTTGGAGATGGCTGG
AGGGCGAAGGAATTCTAAGCAGAACATGTCGAGCTCAAGCCAGTCATATTATCCATCTTGGGTGTATAATCAGCTGGTTC
AACAAAAGATGGGTGAGATTGCCAATGCCTTCAATATGCATGAGCTGGAAAAGAAGTTGTGTGTTGTTGGTCTACATTGC
ATTCAAATGAAGTCTCATGATCGTCCAACGATGAGTGAGGTCATAGAAATGCTTGAAGGTGATGTTGGTGGTCTGCAGCT
GCCTTCAAGGCCATTCTTCTGCGATGATGAACCCCTGCCACTGCTAGTGGATTCTTGCCGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22827.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis