Browse Element(s) Details


OsAffx.2294.2.S1_at

Description tigr:9629.m04917
TID=OsAffx.2294.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5078011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50730Os.29800.1.S1_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.2.S1_s_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730Os.29800.1.S2_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.1.S1_at1/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50740NANA1+29475999..29476460hypothetical protein
LOC_Os01g50750Os.33605.1.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_x_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50760Os.12161.1.S1_at11/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50760Os.52834.1.S1_at1/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein
LOC_Os01g50790NANA1+29501344..29503296transposon protein, putative, unclassified
LOC_Os01g50800Os.41695.15.S1_s_at7/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.3.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.2.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.5.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.4.S1_x_at1/111+29505822..29509584hypothetical protein
LOC_Os01g50810Os.19770.1.S1_at11/111+29510569..29511819pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g50820Os.29842.1.S1_x_at11/111+29515877..29517812nitrate transporter, putative, expressed
LOC_Os01g50830OsAffx.23740.1.S1_at11/111+29518922..29521531expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2294.2.S1_at--510--891Chr01:29498263..29498287 (25 bp)
AGGCCGCTGCGCCTGGGTCGGATGT
LOC_Os01g50780
OsAffx.2294.2.S1_at--1020--4471Chr01:29498273..29498297 (25 bp)
GCCTGGGTCGGATGTTCGAGGAGAA
LOC_Os01g50780
OsAffx.2294.2.S1_at--390--5851Chr01:29498373..29498397 (25 bp)
GACCACTGGACGCTCACACTGACAT
LOC_Os01g50780
OsAffx.2294.2.S1_at--719--1951Chr01:29498377..29498401 (25 bp)
ACTGGACGCTCACACTGACATGGAA
LOC_Os01g50780
OsAffx.2294.2.S1_at--616--8531Chr01:29498379..29498403 (25 bp)
TGGACGCTCACACTGACATGGAAGC
LOC_Os01g50780
OsAffx.2294.2.S1_at--66--4831Chr01:29498384..29498408 (25 bp)
GCTCACACTGACATGGAAGCGGTCC
LOC_Os01g50780
OsAffx.2294.2.S1_at--182--3751Chr01:29498385..29498409 (25 bp)
CTCACACTGACATGGAAGCGGTCCC
LOC_Os01g50780
OsAffx.2294.2.S1_at--607--1871Chr01:29498614..29498635 (22 bp)
ACGAGGAGTCGTGGAGTTCTTGTGG
LOC_Os01g50780
OsAffx.2294.2.S1_at--114--1231Chr01:29498625..29498649 (25 bp)
AGTTCTTGTGGAGGCTGTCAACGAC
LOC_Os01g50780
OsAffx.2294.2.S1_at--362--9571Chr01:29498628..29498652 (25 bp)
TCTTGTGGAGGCTGTCAACGACGGA
LOC_Os01g50780
OsAffx.2294.2.S1_at--5--8571Chr01:29498633..29498657 (25 bp)
TGGAGGCTGTCAACGACGGAGGTGC
LOC_Os01g50780
Target Sequence 
AGGCCGCTGCGCCTGGGTCGGATGTTCGAGGAGAAGACGGGCGGCAGCTGGAGGAGACTGGAGGCGCACGGCGCGGCCGG
TGGCCAACGGACGCCCGCCGCCATCGCCGCGACCACTGGACGCTCACACTGACATGGAAGCGGTCCCCGAGGTCACCGGC
GTGGACCCCGGCGACGACGAGGAGTCGTGGAGTTCTTGTGGAGGCTGTCAACGACGGAGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2294.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis