Browse Element(s) Details


OsAffx.23090.2.S1_x_at

Description tigr:9629.m00193
TID=OsAffx.23090.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0281011/11receptor kinase LRK14, putative
LOC_Os01g027707/11YRK1, putative, expressed
LOC_Os01g028406/11LRK14, putative
LOC_Os01g027906/11receptor kinase LRK14, putative, expressed
LOC_Os01g027504/11receptor kinase LRK14, putative
LOC_Os01g025602/11Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g026001/11Ser/Thr receptor-like kinase, putative
LOC_Os01g024401/11Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g024201/11LRK14, putative
LOC_Os01g026901/11rust resistance kinase Lr10, putative
LOC_Os01g023601/11LRK33, putative, expressed
LOC_Os01g024601/11receptor kinase LRK14, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02770Os.47312.1.A1_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770Os.47312.1.A1_x_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.2.S1_x_at7/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.3.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.9.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.1.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.4.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02780Os.45516.2.S1_x_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780Os.45516.1.S1_at11/111+966142..970129TAK33, putative, expressed
LOC_Os01g02780OsAffx.26617.2.S1_x_at1/111+966142..970129TAK33, putative, expressed
LOC_Os01g02790OsAffx.23090.9.S1_x_at11/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.2.S1_x_at6/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.3.S1_x_at5/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.10881.2.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790OsAffx.23090.4.S1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02790Os.47312.1.A1_x_at1/111+973568..977233receptor kinase LRK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_x_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800Os.35772.3.S1_at11/111+981111..983562TAK14, putative, expressed
LOC_Os01g02800OsAffx.23091.2.S1_x_at1/111+981111..983562TAK14, putative, expressed
LOC_Os01g02810OsAffx.23090.2.S1_x_at11/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.9.S1_x_at8/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.3.S1_x_at6/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.4.S1_x_at2/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02810OsAffx.23090.1.S1_x_at1/111+984393..987449receptor kinase LRK14, putative
LOC_Os01g02830Os.35772.1.S1_at11/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830Os.35772.3.S1_x_at9/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02830OsAffx.23091.2.S1_x_at1/111+991512..994064receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02840OsAffx.23090.3.S1_x_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.3.S1_at11/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.2.S1_x_at6/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.9.S1_x_at4/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.4.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02840OsAffx.23090.1.S1_x_at1/111+994765..997799LRK14, putative
LOC_Os01g02850NANA1+998094..998572hypothetical protein
LOC_Os01g02860Os.45510.1.S1_at8/111+999261..1003870expressed protein
LOC_Os01g02870Os.15390.1.S1_s_at11/111+1007061..1009209nodulin MtN21 family protein, putative, expressed
LOC_Os01g02870Os.5620.2.S1_s_at1/111+1007061..1009209nodulin MtN21 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23090.2.S1_x_at--702--8310Chr01:733324..733348 (25 bp)
AGGCATTGCCCGAGGAATGGAGTAC
NONE
OsAffx.23090.2.S1_x_at--285--2515Chr01:997272..997296 (25 bp)
AACATCTTGCTGGACTATAACTTCA
LOC_Os01g02840
OsAffx.23090.2.S1_x_at--1067--1611Chr01:987004..987028 (25 bp)
AGCTGTGTGCGAGGGACCAAAGCAT
LOC_Os01g02810
OsAffx.23090.2.S1_x_at--411--8014Chr01:997486..997510 (25 bp)
GGAGGAACTCAGACCCAAGTGTTGA
LOC_Os01g02840
OsAffx.23090.2.S1_x_at--338--1392Chr01:987189..987213 (25 bp)
AGCCAAAACGTGGTCTACTTCCCAG
LOC_Os01g02810
OsAffx.23090.2.S1_x_at--868--2493Chr01:987234..987258 (25 bp)
AACAGTGGGCAGGATTTGGCACTTG
LOC_Os01g02810
OsAffx.23090.2.S1_x_at--464--1412Chr01:987294..987318 (25 bp)
AGACAGCTAGCCATTGTAGCGTTAT
LOC_Os01g02810
OsAffx.23090.2.S1_x_at--309--3593Chr01:987305..987329 (25 bp)
CATTGTAGCGTTATGGTGCATTCAG
LOC_Os01g02810
OsAffx.23090.2.S1_x_at--160--1775Chr01:997666..997690 (25 bp)
ACCGGCCATCAATGACAAAGGTGGT
LOC_Os01g02840
OsAffx.23090.2.S1_x_at--696--2895Chr01:997683..997707 (25 bp)
AAGGTGGTGAACATGCTAACAGGGA
LOC_Os01g02840
OsAffx.23090.2.S1_x_at--83--8034Chr01:997705..997729 (25 bp)
GGAGGTTGCAGAATCTACAGGTGCC
LOC_Os01g02840
Target Sequence 
AGGCATTGCCCGAGGAATGGAGTACCTGCATCAAGGATGTAACCAGCGTATCCTCCACTTTGACATCAAGCCTAACAACA
TCTTGCTGGACTATAACTTCAGTCCGAAGATTTCAGACTTTGGCCTTGCAAAGCTGTGTGCGAGGGACCAAAGCATTGTT
ACCTTGACTGCAGCAAGAGGCACAATGGGCTATATTGCACCAGAGCTATATTCTCGGAACTTTGGAGAGATATCTTACAA
GTCAGATGTTTATAGTTTTGGCATGCTGGTGTTAGAAATGGTTAGCGGGAGGAGGAACTCAGACCCAAGTGTTGAAAGCC
AAAACGTGGTCTACTTCCCAGAATGGATCTATGAACAGGTTAACAGTGGGCAGGATTTGGCACTTGGTAGGGAAATGACA
CAGGAAGAGAAAGAAACGGTCAGACAGCTAGCCATTGTAGCGTTATGGTGCATTCAGTGGAACCCAAAGAACCGGCCATC
AATGACAAAGGTGGTGAACATGCTAACAGGGAGGTTGCAGAATCTACAGGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23090.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis