Browse Element(s) Details


OsAffx.23169.2.S1_at

Description tigr:9629.m00883
TID=OsAffx.23169.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0936011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09310Os.54613.1.S1_x_at11/111+4730819..4734408expressed protein
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09340OsAffx.1136.1.S1_at4/111+4750408..4753380hypothetical protein
LOC_Os01g09350NANA1+4755527..4755790hypothetical protein
LOC_Os01g09360OsAffx.23169.1.S1_s_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09360OsAffx.23169.2.S1_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09370Os.9859.3.S1_x_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.3.S1_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.5.S1_x_at8/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.2.S1_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9853.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23169.2.S1_at--646--1511Chr01:4757191..4757215 (25 bp)
AGCAGCGGCTGGGAGCTACTCCAAA
LOC_Os01g09360
OsAffx.23169.2.S1_at--302--3371Chr01:4757189..4757213 (25 bp)
CAGCGGCTGGGAGCTACTCCAAAAA
LOC_Os01g09360
OsAffx.23169.2.S1_at--213--4692Chr05:18242890..18242918 (23 bp)
GCGGCTGGGAGCTACTCCAAAAATT
NONE
OsAffx.23169.2.S1_at--506--8631Chr01:4757182..4757206 (25 bp)
TGGGAGCTACTCCAAAAATTGCTGC
LOC_Os01g09360
OsAffx.23169.2.S1_at--530--8071Chr01:4757180..4757204 (25 bp)
GGAGCTACTCCAAAAATTGCTGCCA
LOC_Os01g09360
OsAffx.23169.2.S1_at--273--1571Chr01:4757178..4757202 (25 bp)
AGCTACTCCAAAAATTGCTGCCACC
LOC_Os01g09360
OsAffx.23169.2.S1_at--621--4851Chr01:4757177..4757201 (25 bp)
GCTACTCCAAAAATTGCTGCCACCA
LOC_Os01g09360
OsAffx.23169.2.S1_at--71--2411Chr01:4757169..4757193 (25 bp)
AAAAATTGCTGCCACCACCCGAGGT
LOC_Os01g09360
OsAffx.23169.2.S1_at--7--2431Chr01:4757168..4757192 (25 bp)
AAAATTGCTGCCACCACCCGAGGTC
LOC_Os01g09360
OsAffx.23169.2.S1_at--442--4071Chr01:4757150..4757174 (25 bp)
CGAGGTCCGGCGTCCTGGGTCTCAC
LOC_Os01g09360
OsAffx.23169.2.S1_at--448--8631Chr01:4757135..4757159 (25 bp)
TGGGTCTCACCAGGGCACATATTCT
LOC_Os01g09360
Target Sequence 
AGCAGCGGCTGGGAGCTACTCCAAAAATTGCTGCCACCACCCGAGGTCCGGCGTCCTGGGTCTCACCAGGGCACATATTC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23169.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis