Browse Element(s) Details


OsAffx.29130.2.A1_at

Description tigr:9637.m01418
TID=OsAffx.29130.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g145602/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14510Os.14919.1.S1_at6/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_s_at5/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.29313.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_x_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510Os.56216.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14520OsAffx.30976.1.S1_at11/1111+8150211..8153716hypothetical protein
LOC_Os11g14530OsAffx.18850.1.S1_at11/1111+8156446..8157113hypothetical protein
LOC_Os11g14544Os.11271.1.S1_a_at11/1111+8158813..8165571expressed protein
LOC_Os11g14544Os.11271.2.S1_at11/1111+8158813..8165571expressed protein
LOC_Os11g14560OsAffx.29130.2.A1_at2/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14560OsAffx.4856.1.S1_x_at1/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14570Os.20234.2.S1_at11/1111+8192643..8196287expressed protein
LOC_Os11g14570Os.20234.1.S1_x_at11/1111+8192643..8196287expressed protein
LOC_Os11g14570Os.20234.1.S1_at11/1111+8192643..8196287expressed protein
LOC_Os11g14570OsAffx.30976.1.S1_at1/1111+8192643..8196287expressed protein
LOC_Os11g14580OsAffx.447.1.S1_at5/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14580OsAffx.22947.2.S1_x_at2/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14580OsAffx.22947.3.S1_x_at1/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14580Os.52609.1.S1_at1/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29130.2.A1_at--673--3691Chr09:10275144..10275168 (25 bp)
CTAGCATGTCTGCATCTCATCAAGA
NONE
OsAffx.29130.2.A1_at--866--171Chr09:10275071..10275095 (25 bp)
ATTTTTTCGTCAACATCCGTGCGCC
NONE
OsAffx.29130.2.A1_at--839--10351Chr09:10275069..10275093 (25 bp)
TTTTTCGTCAACATCCGTGCGCCGC
NONE
OsAffx.29130.2.A1_at--1102--4151Chr09:10275047..10275071 (25 bp)
CGCCGCTGCTTGTGTTGCTTCTGTC
NONE
OsAffx.29130.2.A1_at--348--6651Chr09:10275034..10275058 (25 bp)
GTTGCTTCTGTCTGCTTCCCCGGTT
NONE
OsAffx.29130.2.A1_at--108--3652Chr09:10275030..10275054 (25 bp)
CTTCTGTCTGCTTCCCCGGTTCTAA
NONE
OsAffx.29130.2.A1_at--1158--3951Chr09:10275014..10275038 (25 bp)
CGGTTCTAATTGCTTGCGCGCACGA
NONE
OsAffx.29130.2.A1_at--527--6731Chr09:10275012..10275036 (25 bp)
GTTCTAATTGCTTGCGCGCACGAGA
NONE
OsAffx.29130.2.A1_at--864--60328Chr12:14732007..14732030 (24 bp)
GAGATCGGAACGAGCAGGGCCTCCA
NONE
OsAffx.29130.2.A1_at--572--497Chr12:14888715..14888735 (21 bp)
ATCGGAACGAGCAGGGCCTCCAGAA
NONE
OsAffx.29130.2.A1_at--814--94310Chr12:14888716..14888735 (20 bp)
TCGGAACGAGCAGGGCCTCCAGAAC
NONE
Target Sequence 
CTAGCATGTCTGCATCTCATCAAGATTTGGACCTGCACAGGAGCTAAGCAGATCTCCCAGGCTGGTGTGTTCGATTTTTT
CGTCAACATCCGTGCGCCGCCGCTGCTTGTGTTGCTTCTGTCTGCTTCCCCGGTTCTAATTGCTTGCGCGCACGAGAGAT
CGGAACGAGCAGGGCCTCCAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29130.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis