Browse Element(s) Details


OsAffx.30177.1.S1_at

Description tigr:9632.m05144
TID=OsAffx.30177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to XA1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5305011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed
LOC_Os04g53040Os.51599.2.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.1.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.2.A1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040OsAffx.18229.1.S1_x_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.53813.1.S1_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53050OsAffx.30177.1.S1_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050OsAffx.30177.1.S1_x_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050Os.37971.1.A1_at1/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53060OsAffx.14390.1.S1_at11/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53060OsAffx.26587.1.S1_x_at2/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53070OsAffx.26585.1.S1_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070OsAffx.26585.1.S1_s_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070Os.55000.1.S1_x_at1/114+31390439..31391773hypothetical protein
LOC_Os04g53080OsAffx.26586.1.S1_at8/114+31394274..31394633hypothetical protein
LOC_Os04g53090Os.38395.3.S1_x_at11/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.2.S1_x_at9/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.4.S1_x_at5/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.1.S1_at1/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53110OsAffx.14392.1.S1_at10/114+31410130..31414368hypothetical protein
LOC_Os04g53110Os.52574.2.S1_x_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53110OsAffx.28164.2.S1_at1/114+31410130..31414368hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30177.1.S1_at--528--8071Chr04:31384352..31384376 (25 bp)
GGAGCTAAAGCACCAACTTGGCTTG
LOC_Os04g53050
OsAffx.30177.1.S1_at--1124--5891Chr04:31384353..31384377 (25 bp)
GAGCTAAAGCACCAACTTGGCTTGC
LOC_Os04g53050
OsAffx.30177.1.S1_at--391--1571Chr04:31384354..31384378 (25 bp)
AGCTAAAGCACCAACTTGGCTTGCC
LOC_Os04g53050
OsAffx.30177.1.S1_at--40--4851Chr04:31384355..31384379 (25 bp)
GCTAAAGCACCAACTTGGCTTGCCA
LOC_Os04g53050
OsAffx.30177.1.S1_at--1131--7511Chr04:31384419..31384443 (25 bp)
GTGGAGAATGGCAAAGACTTTCTTT
LOC_Os04g53050
OsAffx.30177.1.S1_at--1084--8051Chr04:31384421..31384445 (25 bp)
GGAGAATGGCAAAGACTTTCTTTAG
LOC_Os04g53050
OsAffx.30177.1.S1_at--114--10331Chr04:31384437..31384461 (25 bp)
TTTCTTTAGAAAGGCTATCACTACT
LOC_Os04g53050
OsAffx.30177.1.S1_at--137--3671Chr04:31384440..31384464 (25 bp)
CTTTAGAAAGGCTATCACTACTTAG
LOC_Os04g53050
OsAffx.30177.1.S1_at--881--10431Chr04:31384442..31384466 (25 bp)
TTAGAAAGGCTATCACTACTTAGAA
LOC_Os04g53050
OsAffx.30177.1.S1_at--620--5571Chr04:31384445..31384469 (25 bp)
GAAAGGCTATCACTACTTAGAAAGC
LOC_Os04g53050
OsAffx.30177.1.S1_at--448--2311Chr04:31384446..31384470 (25 bp)
AAAGGCTATCACTACTTAGAAAGCT
LOC_Os04g53050
Target Sequence 
GGAGCTAAAGCACCAACTTGGCTTGCCACTTCACTTACCCATCTGCAAACACTCCGTCTAGAAAATTGTGGAGAATGGCA
AAGACTTTCTTTAGAAAGGCTATCACTACTTAGAAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis