Browse Element(s) Details


OsAffx.30177.1.S1_x_at

Description tigr:9632.m05144
TID=OsAffx.30177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to XA1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5305011/11NB-ARC domain containing protein
LOC_Os12g033802/11expressed protein
LOC_Os08g079401/11NB-ARC domain containing protein
LOC_Os06g027601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed
LOC_Os04g53040Os.51599.2.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.1.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.2.A1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040OsAffx.18229.1.S1_x_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.53813.1.S1_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53050OsAffx.30177.1.S1_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050OsAffx.30177.1.S1_x_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050Os.37971.1.A1_at1/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53060OsAffx.14390.1.S1_at11/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53060OsAffx.26587.1.S1_x_at2/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53070OsAffx.26585.1.S1_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070OsAffx.26585.1.S1_s_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070Os.55000.1.S1_x_at1/114+31390439..31391773hypothetical protein
LOC_Os04g53080OsAffx.26586.1.S1_at8/114+31394274..31394633hypothetical protein
LOC_Os04g53090Os.38395.3.S1_x_at11/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.2.S1_x_at9/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.4.S1_x_at5/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.1.S1_at1/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53110OsAffx.14392.1.S1_at10/114+31410130..31414368hypothetical protein
LOC_Os04g53110Os.52574.2.S1_x_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53110OsAffx.28164.2.S1_at1/114+31410130..31414368hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30177.1.S1_x_at--1081--8971Chr04:31384306..31384330 (25 bp)
TGAACCACATCGCAACCTCAAGTAT
LOC_Os04g53050
OsAffx.30177.1.S1_x_at--41--4851Chr04:31384355..31384379 (25 bp)
GCTAAAGCACCAACTTGGCTTGCCA
LOC_Os04g53050
OsAffx.30177.1.S1_x_at--528--3551Chr04:31384391..31384415 (25 bp)
CATCTGCAAACACTCCGTCTAGAAA
LOC_Os04g53050
OsAffx.30177.1.S1_x_at--621--5571Chr04:31384445..31384469 (25 bp)
GAAAGGCTATCACTACTTAGAAAGC
LOC_Os04g53050
OsAffx.30177.1.S1_x_at--496--8971Chr04:31384485..31384773 (25 bp)
TGAAGAATGCATCGCCTATCTCCAA
LOC_Os04g53050
OsAffx.30177.1.S1_x_at--709--9212Chr04:31384769..31384793 (25 bp)
TCCAAAGCCTTGATGATGTCGTCGA
LOC_Os04g53050
OsAffx.30177.1.S1_x_at--371--774Chr07:14833252..14833275 (24 bp)
ATGTCGTCGAAGTGTGCCAATTCTA
NONE
OsAffx.30177.1.S1_x_at--984--5513Chr04:31384822..31384846 (25 bp)
GAAAAGATGTATCCCCTTCTCAATG
LOC_Os04g53050
OsAffx.30177.1.S1_x_at--927--3732Chr04:31384840..31384864 (25 bp)
CTCAATGAACTGGACCTTGGAGCCT
LOC_Os04g53050
OsAffx.30177.1.S1_x_at--971--35910Chr12:23804848..23804872 (25 bp)
CTTGGAGCCTTCACAAACTGTTCTT
NONE
OsAffx.30177.1.S1_x_at--892--6735Chr12:1313682..1313706 (25 bp)
GTTCTTCGGTCCTTTGACTGATGAT
LOC_Os12g03380
Target Sequence 
TGAACCACATCGCAACCTCAAGTATCTATGGATATCTTGGTACAATGGAGCTAAAGCACCAACTTGGCTTGCCACTTCAC
TTACCCATCTGCAAACACTCCGTCTAGAAAATTGTGGAGAATGGCAAAGACTTTCTTTAGAAAGGCTATCACTACTTAGA
AAGCTTGTGTTGATCAAGATGAAGAATGCATCGCCTATCTCCAAAGCCTTGATGATGTCGTCGAAGTGTGCCAATTCTAG
GATGATGAAGAAGAAAAGATGTATCCCCTTCTCAATGAACTGGACCTTGGAGCCTTCACAAACTGTTCTTCGGCTCTTCA
TTGATTCGGAGATGTTGATGATGATGATGATGACAATGGACCTTCACAAACTGTTCTTCGGTCCTTTGACTGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30177.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis