Browse Element(s) Details


OsAffx.31546.2.S1_at

Description tigr:9640.m00098
TID=OsAffx.31546.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0196011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01922Os.3740.3.S1_s_at10/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.4.S1_at6/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922Os.3740.3.S1_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01922OsAffx.30773.3.S1_x_at2/1112+540268..549495transducin family protein, putative, expressed
LOC_Os12g01930Os.16743.1.S1_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_s_at11/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_x_at7/1112+553442..557636expressed protein
LOC_Os12g01930OsAffx.6960.1.S1_at6/1112+553442..557636expressed protein
LOC_Os12g01940Os.16743.3.S1_x_at7/1112+558283..561829expressed protein
LOC_Os12g01940Os.16743.3.S1_at6/1112+558283..561829expressed protein
LOC_Os12g01950Os.9846.1.S1_x_at7/1112+561988..564691expressed protein
LOC_Os12g01950Os.9846.2.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.2.S1_x_at1/1112+561988..564691expressed protein
LOC_Os12g01950OsAffx.9909.1.S1_at1/1112+561988..564691expressed protein
LOC_Os12g01960OsAffx.31546.2.S1_at11/1112+567945..569943expressed protein
LOC_Os12g01970OsAffx.19451.2.S1_s_at11/1112+576960..578223hypothetical protein
LOC_Os12g01970OsAffx.19451.3.S1_x_at1/1112+576960..578223hypothetical protein
LOC_Os12g01980OsAffx.31547.1.S1_at11/1112+578828..579954hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_at11/1112+580870..582002hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_x_at10/1112+580870..582002hypothetical protein
LOC_Os12g02000Os.52045.1.S1_at11/1112+582904..584609expressed protein
LOC_Os12g02000Os.51572.1.S1_x_at1/1112+582904..584609expressed protein
LOC_Os12g02010OsAffx.22759.1.S1_at8/1112+591045..593348retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31546.2.S1_at--498--1511Chr12:568300..568324 (25 bp)
AGCAGGAACATGTGGCCGTCCTCGA
LOC_Os12g01960
OsAffx.31546.2.S1_at--832--1751Chr12:568246..568270 (25 bp)
ACCTCGACGCCGAACGTGCTGTTGC
LOC_Os12g01960
OsAffx.31546.2.S1_at--413--1831Chr12:568240..568264 (25 bp)
ACGCCGAACGTGCTGTTGCGCCTCA
LOC_Os12g01960
OsAffx.31546.2.S1_at--92--8451Chr12:568204..568228 (25 bp)
GGCCAGCCGTGCATACCGGTGAAGT
LOC_Os12g01960
OsAffx.31546.2.S1_at--764--1671Chr12:568146..568170 (25 bp)
AGCCGCAGACTGGCTCCGGGCAGAA
LOC_Os12g01960
OsAffx.31546.2.S1_at--112--9431Chr12:568081..568105 (25 bp)
TCGTGGTAGGTCATCCTGACGGCGC
LOC_Os12g01960
OsAffx.31546.2.S1_at--1001--10071Chr12:568075..568099 (25 bp)
TAGGTCATCCTGACGGCGCAGCCGT
LOC_Os12g01960
OsAffx.31546.2.S1_at--398--3473Chr01:1393431..1393455 (25 bp)
CAGGGCACCGTGATGGCGTACAGGA
NONE
OsAffx.31546.2.S1_at--246--4033Chr01:1393447..1393470 (24 bp)
CGTACAGGATGTGGTCGACGGCGAT
NONE
OsAffx.31546.2.S1_at--301--10811Chr12:567988..568012 (25 bp)
TTGTAGCCGGAGACGATGTTGCAGA
LOC_Os12g01960
OsAffx.31546.2.S1_at--766--1391Chr12:567978..568002 (25 bp)
AGACGATGTTGCAGACGTGGTAGCT
LOC_Os12g01960
Target Sequence 
AGCAGGAACATGTGGCCGTCCTCGACGTCGTGGAGGACCCTCTACCCTTCCCGCACCTCGACGCCGAACGTGCTGTTGCG
CCTCATCCCGGTGACCGGCCAGCCGTGCATACCGGTGAAGTGGGCGAGCAGCGCGGCGGGGCCGCCGGCGGCGAAGCCGC
AGACTGGCTCCGGGCAGAAGCACGGCGCGTGCGGGCACCTGCCGGCGTGCTCGTCGACGTCGTGGTAGGTCATCCTGACG
GCGCAGCCGTGGGCGGCGTTGGGGCAGGGCACCGTGATGGCGTACAGGATGTGGTCGACGGCGATGCAGCGGTTGTAGCC
GGAGACGATGTTGCAGACGTGGTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31546.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis