Browse Element(s) Details


OsAffx.31566.2.S1_x_at

Description tigr:9630.m00085
TID=OsAffx.31566.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0186011/11transposon protein, putative, unclassified
LOC_Os12g036609/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01820OsAffx.11993.2.S1_at11/112+451471..454309ABC transporter, putative
LOC_Os02g01820OsAffx.11993.2.S1_s_at10/112+451471..454309ABC transporter, putative
LOC_Os02g01830Os.52249.2.S1_x_at10/112+458781..459988expressed protein
LOC_Os02g01830Os.51370.1.S1_x_at2/112+458781..459988expressed protein
LOC_Os02g01840NANA2+460866..464983retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01850OsAffx.2482.1.S1_at11/112+470490..471675hypothetical protein
LOC_Os02g01850Os.57126.1.S1_at3/112+470490..471675hypothetical protein
LOC_Os02g01860OsAffx.31566.2.S1_x_at11/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.31566.2.S1_at9/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.17654.3.S1_x_at1/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01870Os.9094.1.S1_at1/112+482342..483900expressed protein
LOC_Os02g01880Os.38764.1.S1_x_at8/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880OsAffx.24051.1.S1_x_at4/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.45173.1.S1_x_at3/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.10731.1.A1_a_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.48015.1.A1_x_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.17297.1.S1_at1/112+484667..487862Sec63 domain containing protein
LOC_Os02g01890Os.53775.1.S1_at10/112+488913..490588Cytochrome P450 family protein, expressed
LOC_Os02g01900NANA2+491452..492594hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_at11/112+495570..496075hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_x_at11/112+495570..496075hypothetical protein
LOC_Os02g01920Os.10543.1.S1_at11/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01920OsAffx.2480.1.S1_at5/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01930Os.50322.1.S1_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.9094.1.S2_s_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.50322.1.S2_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.56070.1.S1_x_at1/112+500341..504146expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31566.2.S1_x_at--273--5672Chr12:1468907..1468931 (25 bp)
GACATGCCTTGAAAGCTCTTGATTT
LOC_Os12g03660
OsAffx.31566.2.S1_x_at--468--8192Chr12:1468783..1468807 (25 bp)
GGAAGACCCCAAGCTGAGTACTACT
LOC_Os12g03660
OsAffx.31566.2.S1_x_at--187--491Chr02:478033..478057 (25 bp)
ATCTGTACCAGCAATTTCTTCCTTT
LOC_Os02g01860
OsAffx.31566.2.S1_x_at--871--3113Chr12:1468733..1468757 (25 bp)
AATTTCTTCCTTTGGCTTCCAGAGC
LOC_Os12g03660
OsAffx.31566.2.S1_x_at--670--8292Chr05:16700249..16700273 (25 bp)
GGCTTCCAGAGCTGCAGACTTTGAA
NONE
OsAffx.31566.2.S1_x_at--440--5373Chr12:1468674..1468698 (25 bp)
GAAGCACTTCATGCCGTTAGTAAAA
LOC_Os12g03660
OsAffx.31566.2.S1_x_at--778--8832Chr12:1468597..1468621 (25 bp)
TGATCAGTCAACATCCCAGTTAGCT
LOC_Os12g03660
OsAffx.31566.2.S1_x_at--1091--6772Chr12:1468579..1468603 (25 bp)
GTTAGCTCAGAACTTGGCACATGTC
LOC_Os12g03660
OsAffx.31566.2.S1_x_at--191--8253Chr12:1468564..1468588 (25 bp)
GGCACATGTCTCTGGTCTGAAGAAA
LOC_Os12g03660
OsAffx.31566.2.S1_x_at--1095--3132Chr12:1468308..1468332 (25 bp)
AATTAGCAGCTATGCCCAACTTCTA
LOC_Os12g03660
OsAffx.31566.2.S1_x_at--863--2052Chr12:1468210..1468314 (25 bp)
ACTTCTACTGGGTTCTATTGACGTT
LOC_Os12g03660
Target Sequence 
GACATGCCTTGAAAGCTCTTGATTTAGTGAACATTAAATTGTTGCCTGAAAAATATGTATTGAAGCGTTGGACTCGAGAA
GCAAAATGTGGAGCTATTCAAGATATGCATGGCAGACAAATAGTGGAAGACCCCAAGCTGAGTACTACTCTTAGGTACAG
ATATCTGTACCAGCAATTTCTTCCTTTGGCTTCCAGAGCTGCAGACTTTGAAGAATGTTACTTGCTTGTGGAAGAAGCAC
TTCATGCCGTTAGTAAAAAAGTTGAGGACAAAATAAAACAAACTTACAGTGATGGCATTGCAAAGTCGAATGATCAGTCA
ACATCCCAGTTAGCTCAGAACTTGGCACATGTCTCTGGTCTGAAGAAAAAGGAGAGCCGGAAACGTGTAACAAAACGGAA
AACAAATTGGATTGATAAACTGCAAAAAACAAAAAAGAGAAAGCCTGAAGAAAAGGCAGAGGAGGAAAACATGCAAACTG
ATGTGGAAGAACATCAAGAATGTGAAGCAATTAGCAGCTATGCCCAACTTCTACTGGGTTCTATTGACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31566.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis