Browse Element(s) Details


OsAffx.31821.1.S1_at

Description tigr:9640.m02018
TID=OsAffx.31821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2037011/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20324OsAffx.31820.1.S1_x_at10/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20324Os.4195.1.S1_at9/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20324OsAffx.31820.1.S1_at4/1112+11864243..11868967Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g20340OsAffx.27737.1.S1_at2/1112+11873468..11876472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20340OsAffx.30486.1.S1_at1/1112+11873468..11876472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20350Os.45173.1.S1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350OsAffx.20628.1.S1_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350Os.47130.4.A1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20360OsAffx.19759.1.S1_at10/1112+11886841..11887374hypothetical protein
LOC_Os12g20370OsAffx.31821.1.S1_at11/1112+11889952..11892524Zinc knuckle family protein
LOC_Os12g20380OsAffx.31822.1.S1_at10/1112+11898125..11899921hypothetical protein
LOC_Os12g20390Os.26897.1.S1_at11/1112+11902032..11904607expressed protein
LOC_Os12g20390OsAffx.29424.1.S1_at4/1112+11902032..11904607expressed protein
LOC_Os12g20400OsAffx.26327.1.S1_s_at11/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400Os.15412.1.S1_x_at8/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400OsAffx.26327.1.S1_at7/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20410Os.10969.1.S1_at11/1112+11912727..11915931MAR-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31821.1.S1_at--114--2571Chr12:11890528..11890552 (25 bp)
AACTGTTCTGTTGGTTCATGCCCCT
LOC_Os12g20370
OsAffx.31821.1.S1_at--357--9611Chr12:11890513..11890537 (25 bp)
TCATGCCCCTTTCATTAGCTTGGTG
LOC_Os12g20370
OsAffx.31821.1.S1_at--581--10711Chr12:11890472..11890496 (25 bp)
TTGCTTTTGATTCTTTGCCGCTAGT
LOC_Os12g20370
OsAffx.31821.1.S1_at--513--4851Chr12:11890453..11890477 (25 bp)
GCTAGTTTATCACTCTTCACAGTTG
LOC_Os12g20370
OsAffx.31821.1.S1_at--961--7791Chr12:11890420..11890444 (25 bp)
GGTCGTTCAACCTTTGGGCCATGAT
LOC_Os12g20370
OsAffx.31821.1.S1_at--640--9291Chr12:11890369..11890393 (25 bp)
TCCCCTGGGCCATGATGAGATCTTT
LOC_Os12g20370
OsAffx.31821.1.S1_at--123--3691Chr12:11890348..11890372 (25 bp)
CTTTGATGTTCAACCCTTGGCAATT
LOC_Os12g20370
OsAffx.31821.1.S1_at--886--2771Chr12:11890296..11890320 (25 bp)
AAGAGCCCACCAAGAATCGGACCAG
LOC_Os12g20370
OsAffx.31821.1.S1_at--733--5171Chr12:11890223..11890247 (25 bp)
GCAAGACTGTCATGTTTGATCCTGA
LOC_Os12g20370
OsAffx.31821.1.S1_at--690--1951Chr12:11890065..11890089 (25 bp)
ACTGGCAATAGTTCTTTATCGGCTT
LOC_Os12g20370
OsAffx.31821.1.S1_at--1148--732Chr09:9150318..9150337 (20 bp)
ATGTTTCTCTACATCTGATTCCTCT
NONE
Target Sequence 
AACTGTTCTGTTGGTTCATGCCCCTTTCATTAGCTTGGTGCTCCCAAGAAGAAATGTTGCTTTTGATTCTTTGCCGCTAG
TTTATCACTCTTCACAGTTGCCCCTGGTGGTCGTTCAACCTTTGGGCCATGATGAGGATATGGACCATGACATGGGCTCT
CCCCTGGGCCATGATGAGATCTTTGATGTTCAACCCTTGGCAATTTCAGAGCCACTAGACCAGGCCCAGCCCAAGAGCCC
ACCAAGAATCGGACCAGTGCCTCTCCTGTTAGAACCCCCAAGAGCATCAGTTAAGAAGAGAGATGGCAAGACTGTCATGT
TTGATCCTGACAGGAGGCAGAGTTCTCGGTTGAGATCTTCAAGTCAAGAGCTCACTCAACCTGACCCTAGAATGGGCATA
GGGAAGCCGAGGGGAAAGTCTGCCAAAAAACTGAAAGAGCTGGTAGGTATCTCAAACATTTTAACTGGCAATAGTTCTTT
ATCGGCTTCTGATTTTCATTCTGATTTAGATGAAGAATGTTTCTCTACATCTGATTCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis