Browse Element(s) Details


OsAffx.32334.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=infA
TID=OsAffx.32334.1
CNT=1
FEA=DNA_62
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=initiation factor 1 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=initiation factor 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5794411/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os12g339607/11translation initiation factor IF-1 family protein
LOC_Os01g496146/11Protein kinase domain containing protein, expressed
LOC_Os05g227105/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g397005/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os04g167905/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g213305/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os08g152505/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os06g287504/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57950OsAffx.32337.1.S1_x_at11/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57950Os.26688.1.S2_s_at10/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57960OsAffx.2355.1.S1_at1/111+33833519..33835701retrotransposon protein, putative, unclassified, expressed
LOC_Os01g57974OsAffx.32214.1.S1_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.26050.2.S2_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_x_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.23039.1.S1_x_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.2020.1.S1_at1/111+33851621..33862024retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0006412biological_processprotein biosynthesis
GO:0009621biological_processresponse to pathogenic fungi
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0003723molecular_functionRNA binding
GO:0003735molecular_functionstructural constituent of ribosome
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32334.1.S1_x_at--565--59514Chr12:20445102..20445126 (25 bp)
GAGAAGCAAAAATTACTTTCGAGGG
LOC_Os12g33960
OsAffx.32334.1.S1_x_at--468--93715Chr12:20445120..20445144 (25 bp)
TCGAGGGTTTAGTTATGGAAGCCCT
LOC_Os12g33960
OsAffx.32334.1.S1_x_at--685--8314Chr12:20445134..20445158 (25 bp)
ATGGAAGCCCTACCCAACGGAATGT
LOC_Os12g33960
OsAffx.32334.1.S1_x_at--4--5279Chr12:20445153..20445177 (25 bp)
GAATGTTCCGCGTTCGCCTAGAGAA
LOC_Os12g33960
OsAffx.32334.1.S1_x_at--673--46310Chr12:20445162..20445186 (25 bp)
GCGTTCGCCTAGAGAATGACACCAT
LOC_Os12g33960
OsAffx.32334.1.S1_x_at--1108--77712Chr12:20445216..20445240 (25 bp)
GGTCTAGTTCTATACGAATACTGAT
LOC_Os12g33960
OsAffx.32334.1.S1_x_at--883--2839Chr12:20445261..20445282 (22 bp)
AAGTAAGTCGTTATGATTCAAGCAA
LOC_Os12g33960
OsAffx.32334.1.S1_x_at--836--46110Chr08:9260714..9260738 (25 bp)
GCGTATAATTTATAGACTTCCCCAT
LOC_Os08g15250
OsAffx.32334.1.S1_x_at--358--2910Chr08:9260725..9260749 (25 bp)
ATAGACTTCCCCATAAGGATTCGAA
LOC_Os08g15250
OsAffx.32334.1.S1_x_at--894--65710Chr08:9260742..9260766 (25 bp)
GATTCGAAGCGTACCGAAGACTCGA
LOC_Os08g15250
OsAffx.32334.1.S1_x_at--672--4059Chr08:9260756..9260780 (25 bp)
CGAAGACTCGAAGGATACCGAAGAT
LOC_Os08g15250
Target Sequence 
GAGAAGCAAAAATTACTTTCGAGGGTTTAGTTATGGAAGCCCTACCCAACGGAATGTTCCGCGTTCGCCTAGAGAATGAC
ACCATCATCCTGGGCTATATTTCAGGAAAGATCCGGTCTAGTTCTATACGAATACTGATGGGGGATAGGGTCAAAATTGA
AGTAAGTCGTTATGATTCAAGCAAGGGGCGTATAATTTATAGACTTCCCCATAAGGATTCGAAGCGTACCGAAGACTCGA
AGGATACCGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32334.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis