Browse Element(s) Details


OsAffx.640.1.S1_x_at

Description gb:NM_193933.1
DB_XREF= gi:34914949
GEN=OSJNBa0091E23.16
TID=OsAffx.640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to Oryza sativa chromosome 1, P0698A04.22 (OSJNBa0091E23.16), mRNA.
PROD=similar to Oryza sativa chromosome 1,P0698A04.22
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g255901/11hypothetical protein
LOC_Os09g043601/11hypothetical protein
LOC_Os12g248701/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g25570OsAffx.15611.1.S1_at11/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.1.S1_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.1.S1_x_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.2.S1_x_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.5.S1_x_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25580Os.35344.18.S1_x_at11/116+14958946..14964967Transposable element protein, putative, MuDR
LOC_Os06g25580Os.35344.3.S1_x_at9/116+14958946..14964967Transposable element protein, putative, MuDR
LOC_Os06g25580OsAffx.22940.5.S1_x_at3/116+14958946..14964967Transposable element protein, putative, MuDR
LOC_Os06g25590OsAffx.4938.1.S1_at9/116+14968520..14969029hypothetical protein
LOC_Os06g25590OsAffx.22815.2.S1_at4/116+14968520..14969029hypothetical protein
LOC_Os06g25590OsAffx.640.1.S1_x_at1/116+14968520..14969029hypothetical protein
LOC_Os06g25590Os.55083.1.S1_at1/116+14968520..14969029hypothetical protein
LOC_Os06g25600NANA6+14969502..14969858hypothetical protein
LOC_Os06g25610OsAffx.31802.2.S1_at11/116+14975516..14976790transposon protein, putative, unclassified
LOC_Os06g25620Os.46715.1.S1_x_at1/116+14980692..14981762retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25630OsAffx.20628.2.S1_x_at1/116+14983598..14985853retrotransposon protein, putative, unclassified
LOC_Os06g25630OsAffx.22171.1.S1_at1/116+14983598..14985853retrotransposon protein, putative, unclassified
LOC_Os06g25640NANA6+14986791..14987186retrotransposon protein, putative, unclassified
LOC_Os06g25650OsAffx.22722.1.S1_at1/116+14987531..14989775retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25660Os.50418.1.S1_at11/116+14990042..14993388transposon protein, putative, unclassified, expressed
LOC_Os06g25660OsAffx.31802.1.S1_at4/116+14990042..14993388transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009639biological_processresponse to red or far red light
GO:0010017biological_processred or far red light signaling pathway
GO:0010018biological_processfar red light signaling pathway
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.640.1.S1_x_at--355--9931Chr01:16350884..16350908 (25 bp)
TACGGCTGGCGACGGCCGAACAGAG
NONE
OsAffx.640.1.S1_x_at--1046--4052Chr01:16350934..16350958 (25 bp)
CGATGTTCCGGCGATGGATTTGAAG
NONE
OsAffx.640.1.S1_x_at--655--831Chr01:16350989..16351013 (25 bp)
ATGGAGAATCCATTTGTACCTTCAA
NONE
OsAffx.640.1.S1_x_at--558--1471Chr01:16350993..16351017 (25 bp)
AGAATCCATTTGTACCTTCAATTTC
NONE
OsAffx.640.1.S1_x_at--1024--1251Chr01:16351021..16351206 (25 bp)
AGATTTGCAACTTGAGGGACGAAGG
NONE
OsAffx.640.1.S1_x_at--904--9438Chr12:14256923..14256943 (21 bp)
TCTGGGCATTCGTTCGTCGTTCGTC
LOC_Os12g24870
OsAffx.640.1.S1_x_at--1057--10612Chr01:16351256..16351280 (25 bp)
TTCGTCCTCGTGTGCGCGCGTGCGA
NONE
OsAffx.640.1.S1_x_at--1051--7293Chr11:12585157..12585322 (25 bp)
GTGCGCGCGTGCGAGCGTGTGGCAT
NONE
OsAffx.640.1.S1_x_at--344--4671Chr01:16351281..16351305 (25 bp)
GCGTGTGGCATACGCGGGCTGGCAC
NONE
OsAffx.640.1.S1_x_at--811--3911Chr01:16351299..16351323 (25 bp)
CTGGCACGAGCTGGGCGTGAGCGTG
NONE
OsAffx.640.1.S1_x_at--1093--1611Chr01:16351307..16351331 (25 bp)
AGCTGGGCGTGAGCGTGCGCGAGCA
NONE
Target Sequence 
TACGGCTGGCGACGGCCGAACAGAGCGGCGACGTCGGGAGGCGGCGCCGGCGATGTTCCGGCGATGGATTTGAAGGGGAA
AGAGAGGGGAAAGGGAGTACTCGGCATGGAGAATCCATTTGTACCTTCAATTTCAGAAGATTTGCAACTTGAGGGACGAA
GGAGTTACGGAGGCGGGAAGCTGGAGGTGTCATCTGGGCATTCGTTCGTCGTTCGTCCTCGTGTGCGCGCGTGCGAGCGT
GTGGCATACGCGGGCTGGCACGAGCTGGGCGTGAGCGTGCGCGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.640.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis