Browse Element(s) Details


OsAffx.7175.1.S1_at

Description tigr:9639.m02060
TID=OsAffx.7175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2305011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23010Os.26886.1.S1_x_at9/1111+12751064..12754469transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23010Os.26886.3.S1_x_at5/1111+12751064..12754469transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23010OsAffx.16244.1.S1_x_at1/1111+12751064..12754469transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23020Os.26886.2.S1_s_at8/1111+12757116..12760194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23020Os.26886.6.S1_s_at8/1111+12757116..12760194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23020OsAffx.16467.1.S1_at6/1111+12757116..12760194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23020OsAffx.3425.1.S1_at1/1111+12757116..12760194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g23030OsAffx.31096.1.S1_x_at11/1111+12761369..12762053hypothetical protein
LOC_Os11g23030OsAffx.31096.1.S1_at11/1111+12761369..12762053hypothetical protein
LOC_Os11g23040OsAffx.29376.1.S1_x_at1/1111+12768053..12772899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23040OsAffx.18193.1.S1_at1/1111+12768053..12772899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23050OsAffx.7175.1.S1_at11/1111+12774013..12776619hypothetical protein
LOC_Os11g23060OsAffx.25819.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.13875.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.2.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.3.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25367.1.S1_at1/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23070OsAffx.31097.1.S1_at11/1111+12794607..12798961hypothetical protein
LOC_Os11g23070OsAffx.13875.1.S1_at2/1111+12794607..12798961hypothetical protein
LOC_Os11g23080Os.36149.1.S1_x_at10/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.18078.1.S1_at3/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.9016.1.S1_x_at1/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.51412.1.S1_at1/1111+12800530..12802942expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7175.1.S1_at--173--7571Chr11:12775187..12775296 (25 bp)
GGGCTTCTGAAACAAATTATGGCTT
LOC_Os11g23050
OsAffx.7175.1.S1_at--327--8291Chr11:12775292..12775316 (25 bp)
GGCTTACAAAGCTTATATTACCAAT
LOC_Os11g23050
OsAffx.7175.1.S1_at--460--331Chr11:12775324..12775348 (25 bp)
ATACATCAGATGGTGTCGAGATCAA
LOC_Os11g23050
OsAffx.7175.1.S1_at--680--3091Chr11:12775370..12775394 (25 bp)
AATAGAATGGCCATCTCATGCTAGG
LOC_Os11g23050
OsAffx.7175.1.S1_at--687--2731Chr11:12775523..12775547 (25 bp)
AAGCAAGTTGGCCATGGTACCAAGA
LOC_Os11g23050
OsAffx.7175.1.S1_at--116--6171Chr11:12775546..12775570 (25 bp)
GAGGTTGAAGTCATCTTCTCGTAAA
LOC_Os11g23050
OsAffx.7175.1.S1_at--76--10391Chr11:12775583..12775607 (25 bp)
TTTTCAGCAAAACTGGGTGGTCCAT
LOC_Os11g23050
OsAffx.7175.1.S1_at--746--7851Chr11:12775656..12775680 (25 bp)
GGTTAAGGACTCCACTAATTGGTGT
LOC_Os11g23050
OsAffx.7175.1.S1_at--99--671Chr11:12776113..12776135 (23 bp)
ATGAAGGTCAGCACCCAGAACTCTA
LOC_Os11g23050
OsAffx.7175.1.S1_at--472--2371Chr11:12776154..12776178 (25 bp)
AAACCATGCATCTTATGGGTTCCAA
LOC_Os11g23050
OsAffx.7175.1.S1_at--432--111Chr11:12776182..12776206 (25 bp)
ATTCTCTCAGTGTAGTTGGGAACAG
LOC_Os11g23050
Target Sequence 
GGGCTTCTGAAACAAATTATGGCTTACAAAGCTTATATTACCAATAATAAGAATACATCAGATGGTGTCGAGATCAATGG
CAGCAGTGACATGCCAGAAATAGAATGGCCATCTCATGCTAGGAAAATAACAAAGCATACACAAGATGGCAAGCAAGTTG
GCCATGGTACCAAGAGGTTGAAGTCATCTTCTCGTAAACTTAAAGTTGAATTTTCAGCAAAACTGGGTGGTCCATGTGGA
GACAATAGGCGTACATTTGTGGATGAAGTGGTAATGTACACAAGGTTAAGGACTCCACTAATTGGTGTTAGAAAGTGGAA
AGATGTGAAGCAAGATGTCAAGAATTCAATTGCAGATTGTGTAATGAAGGTCAGCACCCAGAACTCTACGAATAGGCAAC
AAATGAAAACCATGCATCTTATGGGTTCCAAACCATTCTCTCAGTGTAGTTGGGAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis