Browse Element(s) Details


Os.18589.1.S1_at

Description gb:AK068579.1
DB_XREF= gi:32978596
TID=Os.18589.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157C11, full insert sequence.
FL= gb:AK068579.1 gb:AK101565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3328011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33210OsAffx.14107.1.S1_at11/114+19907017..19912334ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os04g33220Os.9140.1.S1_at11/114+19912770..19915614SAM domain family protein, expressed
LOC_Os04g33230OsAffx.26303.1.S1_at10/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.31040.1.S1_at3/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_x_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33240Os.49410.1.A1_at6/114+19922182..19923346oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein
LOC_Os04g33290OsAffx.14109.1.S1_at10/114+19947377..19948529cysteine protease 2, putative
LOC_Os04g33300OsAffx.14110.1.S1_s_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300OsAffx.14110.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33300Os.24773.1.S1_at11/114+19951504..19954375Uridylate kinase, putative, expressed
LOC_Os04g33310OsAffx.26304.1.S1_s_at11/114+19956166..19958434expressed protein
LOC_Os04g33310OsAffx.26304.1.S1_x_at11/114+19956166..19958434expressed protein
LOC_Os04g33310Os.37710.1.S1_at11/114+19956166..19958434expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18589.1.S1_at--932--7591Chr04:19937854..19937878 (25 bp)
GGGAATGCCAGTACCAAACGTCAAG
LOC_Os04g33280
Os.18589.1.S1_at--934--8751Chr04:19937802..19937826 (25 bp)
TGTAGATTGCATTTCAACCCCGACA
LOC_Os04g33280
Os.18589.1.S1_at--249--1811Chr04:19937786..19937810 (25 bp)
ACCCCGACATGCTAGTGGTGTATAT
LOC_Os04g33280
Os.18589.1.S1_at--275--9131Chr04:19937758..19937782 (25 bp)
TGCTGTACATCGTAGCGCATGACTT
LOC_Os04g33280
Os.18589.1.S1_at--230--6871Chr04:19937636..19937660 (25 bp)
GTTTGTGGCTGCTCTGATCCTGACA
LOC_Os04g33280
Os.18589.1.S1_at--1029--7231Chr04:19937579..19937603 (25 bp)
GTCCGCAAATCTACAGTTCAGTTTT
LOC_Os04g33280
Os.18589.1.S1_at--619--5311Chr04:19937527..19937551 (25 bp)
GAAGGTCTATAGTTCTCCGAGGAAA
LOC_Os04g33280
Os.18589.1.S1_at--129--5551Chr04:19937506..19937530 (25 bp)
GAAACTGGCCGAGGTATGCACCCGT
LOC_Os04g33280
Os.18589.1.S1_at--105--2391Chr04:19937445..19937469 (25 bp)
AAACTATCCTTTTACTTCAGATGGG
LOC_Os04g33280
Os.18589.1.S1_at--346--7691Chr04:19937423..19937447 (25 bp)
GGGTATTTCATAAGACTGCTGCAAC
LOC_Os04g33280
Os.18589.1.S1_at--656--271Chr04:19937368..19937392 (25 bp)
ATATGGGCTCGACTTACCCTGATAT
LOC_Os04g33280
Target Sequence 
GGGAATGCCAGTACCAAACGTCAAGAGGATTCAACTGACGAGTATTGCAAACTGTAGATTGCATTTCAACCCCGACATGC
TAGTGGTGTATATATATGCTGTACATCGTAGCGCATGACTTGTTGAATGTAATCTATCTTGATGGAGTATTANGAATGTA
CATTTCCATTAAAAAAATGTACATTTGGAAGGACTAGAATAGAGCGATGAGTTTATGGGTTTGTGGCTGCTCTGATCCTG
ACAGGCACTGGGGGTGCACAGTACTGCACAGTCCTGTCCGCAAATCTACAGTTCAGTTTTACAAGAAATGTTCATTTGGT
AGCAACGGAAGGTCTATAGTTCTCCGAGGAAACTGGCCGAGGTATGCACCCGTGCTTATCATTNTTCGTAAAACTGTAAT
TATTTGTTAAAACTATCCTTTTACTTCAGATGGGTATTTCATAAGACTGCTGCAACAACAACAGCAACAACAGTTGATTT
TATCACATATGGGCTCGACTTACCCTGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis