Browse Element(s) Details

Os.18690.1.S1_at

Description

gb:AK068018.1
DB_XREF= gi:32978036
TID=Os.18690.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SerThr protein phosphatase (P0034C09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134M14, full insert sequence.
FL= gb:AK068018.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g49690	11/11	Serine/threonine protein phosphatase 6, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g49614	Os.11986.1.S1_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.11534.1.S1_x_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.3.S1_x_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.3.S1_at	11/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.41662.1.S1_x_at	9/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32334.1.S1_s_at	7/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32334.1.S1_x_at	6/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	OsAffx.32238.1.A1_at	5/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.11986.2.S1_x_at	4/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.41662.1.S1_at	3/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.27097.1.A1_at	2/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.27097.1.A1_x_at	1/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49614	Os.19294.1.S1_at	1/11	1	+	28850853..28861236	Protein kinase domain containing protein, expressed
LOC_Os01g49630	Os.28525.1.S1_at	11/11	1	+	28861668..28863344	expressed protein
LOC_Os01g49640	Os.18388.1.S1_at	11/11	1	+	28864720..28865464	Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os01g49650	Os.18388.3.S1_at	11/11	1	+	28865645..28866205	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g49660	OsAffx.23728.1.S1_at	11/11	1	+	28866841..28868101	Reticulon family protein
LOC_Os01g49670	Os.7027.1.S1_a_at	11/11	1	+	28868405..28872257	Cytidylyltransferase family protein, expressed
LOC_Os01g49670	Os.7027.1.S1_s_at	11/11	1	+	28868405..28872257	Cytidylyltransferase family protein, expressed
LOC_Os01g49680	Os.32672.1.S1_x_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680	Os.32672.2.S1_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680	Os.32672.3.S1_at	10/11	1	+	28875541..28880596	DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690	Os.18690.1.S1_at	11/11	1	+	28882793..28887542	Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700	OsAffx.2285.1.S1_at	11/11	1	+	28888541..28888850	hypothetical protein
LOC_Os01g49710	Os.38022.2.S1_x_at	11/11	1	+	28893636..28894510	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710	Os.38022.1.S1_at	3/11	1	+	28893636..28894510	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720	OsAffx.11535.1.S1_at	11/11	1	+	28895823..28896613	glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730	Os.57153.1.S1_at	11/11	1	+	28898884..28899768	expressed protein
LOC_Os01g49740	Os.28814.1.S1_at	11/11	1	+	28899980..28902522	expressed protein
LOC_Os01g49740	Os.28814.2.S1_x_at	11/11	1	+	28899980..28902522	expressed protein
LOC_Os01g49750	Os.29043.1.S1_at	11/11	1	+	28902662..28903521	expressed protein
LOC_Os01g49760	Os.33553.2.S1_x_at	11/11	1	+	28904947..28910543	expressed protein
LOC_Os01g49760	Os.33553.1.S1_at	11/11	1	+	28904947..28910543	expressed protein
LOC_Os01g49770	Os.7556.1.S1_x_at	11/11	1	+	28909690..28913374	Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770	Os.45918.1.S1_x_at	11/11	1	+	28909690..28913374	Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770	Os.7556.1.S1_at	11/11	1	+	28909690..28913374	Zinc finger, C3HC4 type family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009910	biological_process	negative regulation of flower development
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0000158	molecular_function	protein phosphatase type 2A activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004722	molecular_function	protein serine/threonine phosphatase activity
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18690.1.S1_at--1052--977	1	Chr01:28887020..28887044 (25 bp)	TAACCAGATGCGAGGACCGAGGACT	LOC_Os01g49690
Os.18690.1.S1_at--871--23	1	Chr01:28887053..28887077 (25 bp)	ATATTTCCTCTGACTTCATCAATTG	LOC_Os01g49690
Os.18690.1.S1_at--1023--691	1	Chr01:28887142..28887166 (25 bp)	GTAGGTCCAGGTCATAGTGCAATCT	LOC_Os01g49690
Os.18690.1.S1_at--938--611	1	Chr01:28887218..28887242 (25 bp)	GAGTGTCATCACTCCTGTATTCCTT	LOC_Os01g49690
Os.18690.1.S1_at--843--687	1	Chr01:28887234..28887258 (25 bp)	GTATTCCTTCTGTGGCGTTGTCAAG	LOC_Os01g49690
Os.18690.1.S1_at--1144--683	1	Chr01:28887263..28887287 (25 bp)	GTTTCTGATTTATTTCGGGTCGACA	LOC_Os01g49690
Os.18690.1.S1_at--836--721	1	Chr01:28887281..28887305 (25 bp)	GTCGACACAGTTTGCCACACAGGAG	LOC_Os01g49690
Os.18690.1.S1_at--712--785	1	Chr01:28887305..28887329 (25 bp)	GGTTTGGGCCGTTATTGTGTTATAT	LOC_Os01g49690
Os.18690.1.S1_at--640--155	1	Chr01:28887340..28887364 (25 bp)	AGCTTCCCACTCACGTGATCAGATA	LOC_Os01g49690
Os.18690.1.S1_at--423--917	1	Chr01:28887369..28887393 (25 bp)	TGCCCCGTGACTTCAAAATTTGCAT	LOC_Os01g49690
Os.18690.1.S1_at--765--463	1	Chr01:28887394..28887418 (25 bp)	GCGATTTGCGCGTAGGTCGTATCAT	LOC_Os01g49690

Target Sequence

TAACCAGATGCGAGGACCGAGGACTGCTGTCCCATATTTCCTCTGACTTCATCAATTGTACAATTTTAGAAGTCATGTTT
TTATCTGTAAGGGTTAAAGATGAAGCAGACCTATTTATTGTTGTAGGTCCAGGTCATAGTGCAATCTAATGCGTATGATT
TTTCTGTTCTTTTAACCACATGTACAATAGACCATTTGGAGTGTCATCACTCCTGTATTCCTTCTGTGGCGTTGTCAAGT
TTTGTTTCTGATTTATTTCGGGTCGACACAGTTTGCCACACAGGAGGTTTGGGCCGTTATTGTGTTATATTTGCAGCTAC
AGCTTCCCACTCACGTGATCAGATAGGCCTGCCCCGTGACTTCAAAATTTGCATGCGATTTGCGCGTAGGTCGTATCAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis