Browse Element(s) Details


Os.2331.1.S1_at

Description gb:BI797790
DB_XREF= gi:15849514
DB_XREF=H087D08
CLONE=H087D08
TID=Os.2331.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2331 (NCBI UniGene Cluster)
UG_TITLE=AIE protein (aie1b) mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g020403/11Hypoxia induced protein conserved region containing protein, expressed
LOC_Os11g020802/11Hypoxia induced protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01990OsAffx.31548.1.S1_at11/1112+580870..582002hypothetical protein
LOC_Os12g01990OsAffx.31548.1.S1_x_at10/1112+580870..582002hypothetical protein
LOC_Os12g02000Os.52045.1.S1_at11/1112+582904..584609expressed protein
LOC_Os12g02000Os.51572.1.S1_x_at1/1112+582904..584609expressed protein
LOC_Os12g02010OsAffx.22759.1.S1_at8/1112+591045..593348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g02020Os.51497.1.A1_s_at11/1112+598639..601697expressed protein
LOC_Os12g02020OsAffx.7458.1.S1_x_at10/1112+598639..601697expressed protein
LOC_Os12g02020Os.18660.1.S1_x_at1/1112+598639..601697expressed protein
LOC_Os12g02030Os.8562.1.S1_a_at11/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.2.S1_x_at10/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02030Os.8562.1.S1_x_at4/1112+601666..603502BTB/POZ domain containing protein, expressed
LOC_Os12g02040Os.46087.1.S1_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.12584.1.S1_x_at9/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_x_at7/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02040Os.2331.1.S1_at3/1112+605574..607215Hypoxia induced protein conserved region containing protein, expressed
LOC_Os12g02050OsAffx.18633.1.S1_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.1.S1_s_at11/1112+609165..611432expressed protein
LOC_Os12g02050OsAffx.18633.2.S1_at1/1112+609165..611432expressed protein
LOC_Os12g02060Os.55595.1.S1_at5/1112+613316..614845Cationic peroxidase 1 precursor, putative, expressed
LOC_Os12g02070Os.50351.1.S1_s_at3/1112+615651..616635expressed protein
LOC_Os12g02070Os.50351.1.S1_at1/1112+615651..616635expressed protein
LOC_Os12g02080Os.11549.1.S1_at11/1112+622582..625113Peroxidase 52 precursor, putative, expressed
LOC_Os12g02090OsAffx.31549.2.S1_x_at3/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02090OsAffx.31549.1.S1_x_at2/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02100Os.39076.1.A1_s_at11/1112+631454..637030expressed protein
LOC_Os12g02100Os.52675.1.S1_at11/1112+631454..637030expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2331.1.S1_at--807--9231NONE
TCCATCCGATGCTCTGCTCTGTATT
NONE
Os.2331.1.S1_at--736--3531NONE
CATCCGATGCTCTGCTCTGTATTAT
NONE
Os.2331.1.S1_at--919--551NONE
ATCCGATGCTCTGCTCTGTATTATC
NONE
Os.2331.1.S1_at--663--4051NONE
CGATGCTCTGCTCTGTATTATCCAT
NONE
Os.2331.1.S1_at--69--6351NONE
GATGCTCTGCTCTGTATTATCCATT
NONE
Os.2331.1.S1_at--210--631NONE
ATGCTCTGCTCTGTATTATCCATTC
NONE
Os.2331.1.S1_at--908--9091NONE
TGCTCTGCTCTGTATTATCCATTCC
NONE
Os.2331.1.S1_at--686--4812Chr12:606514..606549 (24 bp)
GCTCTGCTCTGTATTATCCATTCCA
LOC_Os12g02040
Os.2331.1.S1_at--964--3772Chr12:606513..606549 (25 bp)
CTCTGCTCTGTATTATCCATTCCAT
LOC_Os12g02040
Os.2331.1.S1_at--138--9491Chr12:606512..606548 (25 bp)
TCTGCTCTGTATTATCCATTCCATC
LOC_Os12g02040
Os.2331.1.S1_at--152--9271NONE
TCCTCCGTATAAAAATGCACTAAAA
NONE
Target Sequence 
TCCATCCGATGCTCTGCTCTGTATTATCCATTCCATCCGGCCCCTGCTTTTCCGATGCCTTGATTATTGTTCCTCCGTAT
AAAAATGCACTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis