Browse Element(s) Details


Os.27435.1.S1_x_at

Description gb:NM_186745.1
DB_XREF= gi:34900575
GEN=P0565A07.21
TID=Os.27435.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0565A07.21 (P0565A07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0565A07.21 (P0565A07.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1343011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g260807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g321106/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g262906/11hypothetical protein
LOC_Os11g355306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g203605/11hypothetical protein
LOC_Os10g116505/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g174905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g141705/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g261104/11hypothetical protein
LOC_Os06g167604/11hypothetical protein
LOC_Os04g293204/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g228304/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g097164/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g161604/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g204803/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g193303/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g157103/11transposon protein, putative, unclassified
LOC_Os12g353802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g295702/11retrotransposon protein, putative, unclassified
LOC_Os08g304402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13390OsAffx.22940.1.S1_s_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.3.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.18.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_s_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_at8/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.3.S1_x_at6/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13400OsAffx.22421.2.S1_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13400OsAffx.16244.1.S1_x_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13420OsAffx.22947.2.S1_x_at11/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.1.S1_x_at7/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.3.S1_x_at5/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.5.S1_x_at3/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13430Os.27435.1.S1_x_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.27435.1.S1_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46985.1.S1_x_at2/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_at1/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13440Os.12306.1.S1_at3/117+7706895..7707119hypothetical protein
LOC_Os07g13450Os.25193.1.S1_at10/117+7708866..7709367expressed protein
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27435.1.S1_x_at--898--2892Chr07:7703545..7703569 (25 bp)
AAGGTCGACAGTAGGCCGCACCTCT
LOC_Os07g13430
Os.27435.1.S1_x_at--681--51713Chr12:19336317..19336341 (25 bp)
GCAAGAGGGCGAAATCTTCTCCACC
LOC_Os12g32110
Os.27435.1.S1_x_at--798--18115Chr12:19336339..19336387 (25 bp)
ACCCAAGCTTGACACACGCAGAAAA
LOC_Os12g32110
Os.27435.1.S1_x_at--825--23113Chr12:21480476..21480500 (25 bp)
AAAGGTGCCATTAGCCCCAAAGAAG
LOC_Os12g35380
Os.27435.1.S1_x_at--1104--49111Chr12:19336414..19336438 (25 bp)
GCTTGATCTTGGCAAGGCGCCAGTA
LOC_Os12g32110
Os.27435.1.S1_x_at--489--78114Chr12:21480569..21480593 (25 bp)
GGTCGGAGACGATGCCTTATTCAAG
LOC_Os12g35380
Os.27435.1.S1_x_at--1135--27913Chr11:11053639..11053663 (25 bp)
AAGATGGGCCCTGCATGCAAGGAGT
LOC_Os11g19330
Os.27435.1.S1_x_at--1045--10031Chr07:7703844..7703868 (25 bp)
TAGAGAGACCTACATGTTGGGCCAG
LOC_Os07g13430
Os.27435.1.S1_x_at--788--6231Chr07:7703872..7703896 (25 bp)
GATGGTCAGCCGTTTCTCGGGCCTA
LOC_Os07g13430
Os.27435.1.S1_x_at--482--17514Chr12:19336662..19336686 (25 bp)
ACCTCTACAGGGTGCGAGCGATCGA
LOC_Os12g32110
Os.27435.1.S1_x_at--5--10231Chr07:7704098..7704122 (25 bp)
TATTGCCTTACTTGATCCAACTGTC
LOC_Os07g13430
Target Sequence 
AAGGTCGACAGTAGGCCGCACCTCTCCCCTCTTGCCAAAAGTAGCAAGAGGGCGAAATCTTCTCCACCCAAGCTTGACAC
ACGCAGAAAAGCTGCTGGAACGGGGAGAGGAAAAGTAAAGGTGCCATTAGCCCCAAAGAAGCTTGATCTTGGCAAGGCGC
CAGTAGCTCCTCCAAAGCTTCCAGCCGAATTCACATTCGGCATGCCATTGGTCGGAGACGATGCCTTATTCAAGATGGGC
CCTGCATGCAAGGAGTTGCACGGGTACTACATGGAGAAGTCCAATGCAAGGAGGAAGAATAGAGAGACCTACATGTTGGG
CCAGCATGATGGTCAGCCGTTTCTCGGGCCTACTGCCTTCATCGCCATAGACTTCAAAGATCTATGGGACCTCTACAGGG
TGCGAGCGATCGACACCAACCTCCTTAAGTGCTACTCCTTATTAACCTGGAAGCATGTCCATCATAAAGCACCCCATATT
GCCTTACTTGATCCAACTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27435.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis