Browse Element(s) Details


Os.30258.1.S1_at

Description gb:AK063520.1
DB_XREF= gi:32973538
TID=Os.30258.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative subtilase (P0684C02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H07, full insert sequence.
FL= gb:AK063520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5824011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein
LOC_Os01g58194Os.42305.2.S1_x_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.8427.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.42305.1.S1_s_at11/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_at2/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58194Os.35273.2.S1_x_at1/111+33968802..33977777protein disulfide isomerase, putative, expressed
LOC_Os01g58220Os.38804.1.S1_at10/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220OsAffx.10645.5.S1_x_at9/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58220Os.52686.1.S1_at2/111+33977992..33982027Protein translation factor SUI1 homolog, putative, expressed
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30258.1.S1_at--53--491Chr01:33989497..33989521 (25 bp)
ATCTGTCAGCTGTAATGCAACAACG
LOC_Os01g58240
Os.30258.1.S1_at--1055--2591Chr01:33989518..33989542 (25 bp)
AACGCTACCTGGGTATCACCTGAAT
LOC_Os01g58240
Os.30258.1.S1_at--167--9631Chr01:33989568..33989592 (25 bp)
TCAGGAATCCAACCACAGTATCTAG
LOC_Os01g58240
Os.30258.1.S1_at--325--9191Chr01:33989809..33989833 (25 bp)
TCCAATAGCAGTCCGGATTACCATT
LOC_Os01g58240
Os.30258.1.S1_at--623--7171Chr01:33989819..33989843 (25 bp)
GTCCGGATTACCATTCAAGATTTCT
LOC_Os01g58240
Os.30258.1.S1_at--344--4271Chr01:33989861..33989885 (25 bp)
CCTGGGTCCAGGGTGAAACATGCAG
LOC_Os01g58240
Os.30258.1.S1_at--898--4991Chr01:33989882..33989906 (25 bp)
GCAGGAAATAACACAGCGCTCATAG
LOC_Os01g58240
Os.30258.1.S1_at--17--1331Chr01:33989914..33989938 (25 bp)
AGAGTCTACAGGAGATACCAATTTC
LOC_Os01g58240
Os.30258.1.S1_at--366--6751Chr01:33989996..33990020 (25 bp)
GTTCAGGTCTATGTTTGCCAACTTT
LOC_Os01g58240
Os.30258.1.S1_at--549--10751Chr01:33990020..33990044 (25 bp)
TTGAAATATCATGTACCTGCCCCTC
LOC_Os01g58240
Os.30258.1.S1_at--1016--9771Chr01:33990050..33990074 (25 bp)
TAACGCAGCATGACAATGACTACAG
LOC_Os01g58240
Target Sequence 
ATCTGTCAGCTGTAATGCAACAACGCTACCTGGGTATCACCTGAATCTACCATCAATCGCTCTTCCTGATCTCAGGAATC
CAACCACAGTATCTAGAACAGTGACAAATGTAGGCGAGGTTAATGCAGTTTACCACGCTGAAATCCAGAGCCCGCCTGGA
GTTAAAATGGTTGTTGAGCCATCTGTTCTTGTCTTTGATGCTGCAAACAAAGTTCATACCTTCAAGGTTAGTTTTTCACC
TCTATGGAAATTGCAAGGGGACTATACATTTGGCAGCCTTACTTGGCACAATGAAAAGAAGTCGGTGAGAATTCCAATAG
CAGTCCGGATTACCATTCAAGATTTCTATGCAGATGTTGCATAACCTGGGTCCAGGGTGAAACATGCAGGAAATAACACA
GCGCTCATAGAAACAATAGAGTCTACAGGAGATACCAATTTCCACAGAACTACAGAAGTATTGGTTTTGTGTATTTCTTT
ATTACCAGAATACAAAAATGTTCAGGTCTATGTTTGCCAACTTTTGAAATATCATGTACCTGCCCCTCCCACCTAACGCA
GCATGACAATGACTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis