Browse Element(s) Details


Os.35731.2.S1_x_at

Description gb:AK066055.1
DB_XREF= gi:32976073
TID=Os.35731.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1092_A07.23 (OJ1092_A07.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050J15, full insert sequence.
FL= gb:AK066055.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g041905/11hexose transporter, putative, expressed
LOC_Os07g380804/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_x_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04230Os.45423.1.S1_at8/111+1864738..1867192Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35731.2.S1_x_at--1017--3451Chr07:22833447..22833471 (25 bp)
CAGTGATTATATTCCTCTGCCAGGA
LOC_Os07g38080
Os.35731.2.S1_x_at--182--3011Chr07:22833423..22833447 (25 bp)
AATGACACATTATTCCTGGACTGAT
LOC_Os07g38080
Os.35731.2.S1_x_at--68--5971Chr07:22833310..22833334 (25 bp)
GAGAAGTTCTATCCTATTACTACGG
LOC_Os07g38080
Os.35731.2.S1_x_at--138--2031Chr07:22833292..22833316 (25 bp)
ACTACGGAGAGTTCTTCAGGTCTGA
LOC_Os07g38080
Os.35731.2.S1_x_at--434--511NONE
ATCGATGGGCTGCAAGCTGATCTGC
NONE
Os.35731.2.S1_x_at--299--6411Chr01:1845552..1845576 (25 bp)
GATCTGCAACTCCAGCAGGTGACTG
LOC_Os01g04190
Os.35731.2.S1_x_at--868--2731Chr01:1845588..1845612 (25 bp)
AAGAAAACATCCTCTGGCTTTCCGT
LOC_Os01g04190
Os.35731.2.S1_x_at--388--2371Chr01:1845642..1845666 (25 bp)
AAACGAGTGGCTACTTGGCAAGTGA
LOC_Os01g04190
Os.35731.2.S1_x_at--919--3131Chr01:1845812..1845836 (25 bp)
AATTAGATGCCAGTATGCCACCGCT
LOC_Os01g04190
Os.35731.2.S1_x_at--363--591Chr01:1845826..1845850 (25 bp)
ATGCCACCGCTTCTAGTGTATAGAG
LOC_Os01g04190
Os.35731.2.S1_x_at--563--2431NONE
AAAAGCAGCTCGTCGAATTTACACC
NONE
Target Sequence 
CAGTGATTATATTCCTCTGCCAGGAATGACACATTATTCCTGGACTGATGAAGAAGCACAAACTTTTCTTCTTGGTCTAT
ATATTTTTGGCAAAAATCTTGTTCAGGTGACAAAATTTTTGCAATGTAAGACAATGGGAGAAGTTCTATCCTATTACTAC
GGAGAGTTCTTCAGGTCTGATTCATATAATCGATGGGCTGCAAGCTGATCTGCAACTCCAGCAGGTGACTGGATGGGCAT
TCAAGAAAACATCCTCTGGCTTTCCGTCCAGTAGATGTTCATTCTAGTCTTGAAATAAACGAGTGGCTACTTGGCAAGTG
AACTTCTTCTTCTTCTTCTTCTTCTTCTTGTTTTTTTTTTTTTTTTGAACTGGAGTGGCAAGTAAAGTTGGTATCTGTGA
ATTGGTTGGAGCTTCGAGGGTTGTGAATTCTGACATTTGTCAGAATAAAAGAAGTTCATACTGTAGCAATTAGATGCCAG
TATGCCACCGCTTCTAGTGTATAGAGGAACTTTTCTTCCATCTGTTGGAAATAATAAAAGCAGCTCGTCGAATTTACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35731.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis