Browse Element(s) Details


Os.54024.1.S1_at

Description gb:AK101382.1
DB_XREF= gi:32986591
TID=Os.54024.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036E19, full insert sequence.
FL= gb:AK101382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2295411/11Serine carboxypeptidase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22900Os.17741.1.S1_at11/111+12852721..12856739beta-fructofuranosidase, putative, expressed
LOC_Os01g22910OsAffx.23722.3.S1_x_at10/111+12857979..12865021oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os01g22920OsAffx.23722.5.S1_s_at11/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22920OsAffx.23722.5.S1_at9/111+12866955..12868032Gibberellin 2-beta-dioxygenase, putative
LOC_Os01g22930OsAffx.10665.3.S1_x_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.3.S1_at11/111+12872967..12873994hypothetical protein
LOC_Os01g22930OsAffx.10665.1.S1_x_at2/111+12872967..12873994hypothetical protein
LOC_Os01g22954OsAffx.1775.1.S1_x_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.54024.1.S1_at11/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.1775.1.S1_at9/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.21416.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.25582.1.S1_at2/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954OsAffx.8735.1.A1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22954Os.51490.1.S1_at1/111+12878670..12897861Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g22980Os.15062.1.S1_a_at11/111+12897815..12901690Serine carboxypeptidase family protein, expressed
LOC_Os01g22990OsAffx.22867.1.S1_x_at11/111+12903980..12907269expressed protein
LOC_Os01g22990Os.7786.1.S1_at11/111+12903980..12907269expressed protein
LOC_Os01g23000OsAffx.23347.1.S1_s_at11/111+12914892..12916022hypothetical protein
LOC_Os01g23000OsAffx.23347.1.S1_at1/111+12914892..12916022hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54024.1.S1_at--473--7771Chr01:12896900..12896924 (25 bp)
GGTGCTTTCTGTCTTGCCAATCTAT
LOC_Os01g22954
Os.54024.1.S1_at--512--4391Chr01:12896915..12896939 (25 bp)
GCCAATCTATTCGAAGCTCATCAAA
LOC_Os01g22954
Os.54024.1.S1_at--569--5011Chr01:12896940..12896964 (25 bp)
GCAGGACTCAGAATTTGGCTCTACA
LOC_Os01g22954
Os.54024.1.S1_at--520--7531Chr01:12897233..12897257 (25 bp)
GTGGAAGCGCTTGGGCTGCATATCA
LOC_Os01g22954
Os.54024.1.S1_at--584--7631Chr01:12897261..12897285 (25 bp)
GGGACTGGCAACCTTGGTACCTGAA
LOC_Os01g22954
Os.54024.1.S1_at--663--6911Chr01:12897487..12897511 (25 bp)
GTGCTGGACATTTGGTACCCCTTAA
LOC_Os01g22954
Os.54024.1.S1_at--634--6591Chr01:12897536..12897560 (25 bp)
GATTGACACATTTCTTCTTGGTAAA
LOC_Os01g22954
Os.54024.1.S1_at--244--7051Chr01:12897556..12897580 (25 bp)
GTAAACAGCTCTTAACACACCGATG
LOC_Os01g22954
Os.54024.1.S1_at--324--7451Chr01:12897668..12897692 (25 bp)
GTGTCAACCATTATTCCAGGAGCCA
LOC_Os01g22954
Os.54024.1.S1_at--515--6671Chr01:12897761..12897785 (25 bp)
GTTGCATTCTTTCACTTCTTTCTAT
LOC_Os01g22954
Os.54024.1.S1_at--630--3691Chr01:12897782..12897806 (25 bp)
CTATCCAGCCTGAAGCTCTTGGTAA
LOC_Os01g22954
Target Sequence 
GGTGCTTTCTGTCTTGCCAATCTATTCGAAGCTCATCAAAGCAGGACTCAGAATTTGGCTCTACAGTGGAGATGCCGACG
GTAGGGTCCCAGTGATCGGGTCAAGGTACTGCGTGGAAGCGCTTGGGCTGCATATCAAGAGGGACTGGCAACCTTGGTAC
CTGAACAGACAGGTTGCAGGAAGATTTGTGGAGTACGATGGCATGACCATGGTGACGATTAGAGGTGCTGGACATTTGGT
ACCCCTTAATAAACCTGAAGAAGGGCTCACTCTGATTGACACATTTCTTCTTGGTAAACAGCTCTTAACACACCGATGAA
AGGTAAATTTAGGTTAAAAGGAAGTTGGGACTATTTGTCCTAAAAGTTGCTCAATGAGTGTCAACCATTATTGTTTGAGA
AAGAAGTGTCAACCATTATTCCAGGAGCCATGGCATAGCTGAAATTATTCCTTTTAAGGGACAGTTTGAATTTCAGTCTG
ATCCTTTTGAATGCTGCTGTTGCATTCTTTCACTTCTTTCTATCCAGCCTGAAGCTCTTGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis