Browse Element(s) Details


Os.54119.1.S1_at

Description gb:AK102046.1
DB_XREF= gi:32987255
TID=Os.54119.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081N02, full insert sequence.
FL= gb:AK102046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5932010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59260Os.264.1.S1_at11/114+35026349..35027661Peroxidase family protein, expressed
LOC_Os04g59270OsAffx.9246.2.S1_at11/114+35028112..35029350hypothetical protein
LOC_Os04g59280Os.31312.2.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59280Os.31312.5.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_x_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59300OsAffx.14477.1.S1_at11/114+35045648..35047185hypothetical protein
LOC_Os04g59300OsAffx.31661.2.S1_at1/114+35045648..35047185hypothetical protein
LOC_Os04g59310Os.53827.1.S1_at11/114+35048224..35051178MAP3K-like protein kinase, putative, expressed
LOC_Os04g59320Os.54119.1.S1_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59320Os.6595.2.S1_s_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59330OsAffx.4214.1.S1_x_at11/114+35058615..35060079expressed protein
LOC_Os04g59330Os.8314.1.S1_at11/114+35058615..35060079expressed protein
LOC_Os04g59350OsAffx.14478.1.S1_at11/114+35060596..35061683hypothetical protein
LOC_Os04g59340Os.37570.1.S1_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.37570.1.S1_s_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.10647.2.S1_at7/114+35061587..35063617expressed protein
LOC_Os04g59360OsAffx.26665.1.S1_at11/114+35064131..35067101csAtPR5, putative
LOC_Os04g59370Os.51125.1.S1_at11/114+35068706..35070078Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os04g59380Os.257.1.S1_at11/114+35078601..35081273expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54119.1.S1_at--514--1151NONE
AGTCTGTACTTTGCAATTCTTTATA
NONE
Os.54119.1.S1_at--364--10151Chr04:35057522..35057546 (25 bp)
TATAGAACTGTTACTGCGACGGTGT
LOC_Os04g59320
Os.54119.1.S1_at--387--10471Chr04:35057532..35057556 (25 bp)
TTACTGCGACGGTGTGTTTTCTTGT
LOC_Os04g59320
Os.54119.1.S1_at--500--9551Chr04:35057571..35057595 (25 bp)
TCTTTTGCTGTGAGACATGTCACTG
LOC_Os04g59320
Os.54119.1.S1_at--735--3512Chr05:22860344..22860383 (24 bp)
CATGTCACTGTGAGCTTGTTGGCAA
NONE
Os.54119.1.S1_at--857--6591Chr04:35057603..35057627 (25 bp)
GTTGGCAAATGGTTGCAAGCGGCAC
LOC_Os04g59320
Os.54119.1.S1_at--1003--2291Chr04:35057609..35057633 (25 bp)
AAATGGTTGCAAGCGGCACGAGGTT
LOC_Os04g59320
Os.54119.1.S1_at--1013--7551Chr04:35057636..35057660 (25 bp)
GGGCCAGTGGGCAGAGAAACAAATC
LOC_Os04g59320
Os.54119.1.S1_at--376--2631Chr04:35057651..35057675 (25 bp)
GAAACAAATCCAGACAAAACCTCGA
LOC_Os04g59320
Os.54119.1.S1_at--406--9211Chr04:35057659..35057683 (25 bp)
TCCAGACAAAACCTCGAGATCCCAT
LOC_Os04g59320
Os.54119.1.S1_at--689--6031Chr04:35057674..35057698 (25 bp)
GAGATCCCATCCTTGCTGGATGCAT
LOC_Os04g59320
Target Sequence 
AGTCTGTACTTTGCAATTCTTTATAGAACTGTTACTGCGACGGTGTGTTTTCTTGTTTGTATTTTTTTTTTCTTTTGCTG
TGAGACATGTCACTGTGAGCTTGTTGGCAAATGGTTGCAAGCGGCACGAGGTTTTGGGCCAGTGGGCAGAGAAACAAATC
CAGACAAAACCTCGAGATCCCATCCTTGCTGGATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis