Browse Element(s) Details


Os.54957.1.S1_at

Description gb:AK107184.1
DB_XREF= gi:32992393
TID=Os.54957.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H07, full insert sequence.
FL= gb:AK107184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4478011/11Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os01g717701/11RNA-binding like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44710Os.49303.1.S1_a_at11/114+26265032..26275498C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os04g44730OsAffx.4090.1.S1_s_at11/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730Os.10728.1.S1_at1/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44750Os.8185.1.S1_s_at11/114+26286987..26289714Sugar transporter family protein, expressed
LOC_Os04g44760OsAffx.26464.1.S1_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44760OsAffx.26464.1.S1_s_at11/114+26290979..26291737hypothetical protein
LOC_Os04g44770Os.52295.1.S1_at11/114+26292269..26296227expressed protein
LOC_Os04g44770Os.10093.4.S1_s_at1/114+26292269..26296227expressed protein
LOC_Os04g44780Os.54957.1.S1_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_s_at11/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44780OsAffx.4092.1.S1_at7/114+26299692..26302965Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os04g44790Os.28068.1.S1_at9/114+26303893..26304457hypothetical protein
LOC_Os04g44800Os.6331.1.S1_at9/114+26305176..26309286expressed protein
LOC_Os04g44800Os.51352.1.S1_x_at7/114+26305176..26309286expressed protein
LOC_Os04g44800OsAffx.12383.1.S1_at1/114+26305176..26309286expressed protein
LOC_Os04g44810Os.12341.1.S1_at11/114+26309423..26312627Syntaxin 81, putative, expressed
LOC_Os04g44820Os.6205.1.S1_a_at11/114+26313540..26316878Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g44830Os.7403.1.S1_at11/114+26321378..26323883Thioredoxin M-type 1, chloroplast precursor, putative, expressed
LOC_Os04g44840Os.16394.1.S1_at11/114+26324156..26327834Glycosyl hydrolase family 3 C terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54957.1.S1_at--287--10291Chr04:26302422..26302446 (25 bp)
TTATCGGCCCGGGAAACTGCCAGGT
LOC_Os04g44780
Os.54957.1.S1_at--1159--551Chr04:26302500..26302524 (25 bp)
ATCCTCCATTGTTATGCAGCTCATC
LOC_Os04g44780
Os.54957.1.S1_at--147--6031Chr04:26302630..26302654 (25 bp)
GAGATGGCCCATGCGCAACAGGTAG
LOC_Os04g44780
Os.54957.1.S1_at--560--4031Chr04:26302680..26302704 (25 bp)
CGTTTTGCTGCTTGGTTTGCTTCAA
LOC_Os04g44780
Os.54957.1.S1_at--155--1071Chr04:26302749..26302773 (25 bp)
AGGGTTTTGGATCTCTCTTGGTCTC
LOC_Os04g44780
Os.54957.1.S1_at--864--1992Chr04:26302786..26302810 (25 bp)
ACTCCTGTGCTCCTGTTTTGTGTGT
LOC_Os04g44780
Os.54957.1.S1_at--612--9411Chr04:26302856..26302880 (25 bp)
TCGTGTGTGTTTGCCCTGGTCGAAA
LOC_Os04g44780
Os.54957.1.S1_at--329--8591Chr04:26302872..26302896 (25 bp)
TGGTCGAAACGCAGTCGCAGGGTTC
LOC_Os04g44780
Os.54957.1.S1_at--414--1071Chr04:26302890..26302914 (25 bp)
AGGGTTCGTGAGTCAATGCCACCTT
LOC_Os04g44780
Os.54957.1.S1_at--64--3031Chr04:26302904..26302928 (25 bp)
AATGCCACCTTTTATGCCGTGTGTT
LOC_Os04g44780
Os.54957.1.S1_at--965--3991Chr04:26302921..26302945 (25 bp)
CGTGTGTTCTTGATCCGGCTGAGAA
LOC_Os04g44780
Target Sequence 
TTATCGGCCCGGGAAACTGCCAGGTGGGCCCGCAAAGGCAGGCCCGACGTGGCAGTCGGTCAGGCAGGAGAGCCAGGCAT
CCTCCATTGTTATGCAGCTCATCATATTAGTTGGTCTGATCATTCATGATTCTATTCATGGTAAGTGTAGCTAATTTAGC
TGTTTTGGTGAGTGTGTGTCAGTGTGAGTAGTTTGTTCAGGAATCAGGGAGATGGCCCATGCGCAACAGGTAGCCGCCCT
CTCCGAAGGAGAAGAGAGCGTTTTGCTGCTTGGTTTGCTTCAAGGATTTACCTGTAGGAGGGCTGAAGCTGGGGAGAAGT
AGGTCCGAGGGTTTTGGATCTCTCTTGGTCTCTCCTGCCTTGACACTCCTGTGCTCCTGTTTTGTGTGTGTGTGTGTGTG
TGTGTGTGCGCGCGCGCGCGCGCGCGCGCGCTGTTCGTGTGTGTTTGCCCTGGTCGAAACGCAGTCGCAGGGTTCGTGAG
TCAATGCCACCTTTTATGCCGTGTGTTCTTGATCCGGCTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis