Browse Element(s) Details


Os.55728.1.S1_at

Description gb:AK108671.1
DB_XREF= gi:32993880
TID=Os.55728.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55728 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H05, full insert sequence.
FL= gb:AK108671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0347011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed
LOC_Os08g03450Os.50741.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50728.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50727.1.S1_x_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.50740.1.S1_at11/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03450Os.38814.1.S1_at9/118+1612871..161504960S ribosomal protein L37, putative, expressed
LOC_Os08g03460OsAffx.16807.1.S1_at10/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_x_at2/118+1619165..1621144hypothetical protein
LOC_Os08g03460Os.50672.1.S2_at1/118+1619165..1621144hypothetical protein
LOC_Os08g03470Os.55728.1.S1_at11/118+1622159..1624828BTB/POZ domain containing protein, expressed
LOC_Os08g03480OsAffx.16808.1.S1_at11/118+1625893..1626795BTB/POZ domain containing protein
LOC_Os08g03490OsAffx.29013.1.S1_at11/118+1628158..1629192BTB/POZ domain containing protein
LOC_Os08g03500OsAffx.5690.1.S1_at11/118+1632883..1633947BTB/POZ domain containing protein
LOC_Os08g03510OsAffx.5691.1.S1_at11/118+1635964..1637010BTB/POZ domain containing protein
LOC_Os08g03520Os.54054.1.S1_x_at11/118+1638666..1639659retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g03530OsAffx.16809.1.S1_at11/118+1639993..1641141BTB/POZ domain containing protein
LOC_Os08g03540OsAffx.29014.1.S1_at11/118+1642169..1642687expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_s_at11/118+1642693..1646264expressed protein
LOC_Os08g03550Os.23881.1.A1_at11/118+1642693..1646264expressed protein
LOC_Os08g03550OsAffx.29015.1.S1_at8/118+1642693..1646264expressed protein
LOC_Os08g03560Os.54141.1.S1_at10/118+1646971..1651929expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55728.1.S1_at--1051--6591Chr08:1624228..1624252 (25 bp)
GATTGTGTTCCAAGAATGGATGATC
LOC_Os08g03470
Os.55728.1.S1_at--831--5271Chr08:1624241..1624265 (25 bp)
GAATGGATGATCTTGGCAATGGTGA
LOC_Os08g03470
Os.55728.1.S1_at--1007--911Chr08:1624321..1624345 (25 bp)
AGGCTCAGGATCATGTGCGAGAGAT
LOC_Os08g03470
Os.55728.1.S1_at--367--6431Chr08:1624329..1624353 (25 bp)
GATCATGTGCGAGAGATTTCTAGCT
LOC_Os08g03470
Os.55728.1.S1_at--1021--1251Chr08:1624342..1624366 (25 bp)
AGATTTCTAGCTACGAACCTCGACA
LOC_Os08g03470
Os.55728.1.S1_at--308--1751Chr08:1624358..1624382 (25 bp)
ACCTCGACACGGAGCATGTATCTGC
LOC_Os08g03470
Os.55728.1.S1_at--1116--9991Chr08:1624394..1624418 (25 bp)
TAGCTGACTTGCTAGATCTCAAGAA
LOC_Os08g03470
Os.55728.1.S1_at--4--2851Chr08:1624479..1624503 (25 bp)
AAGTCAAGGGTACCAGCAGCTGAAG
LOC_Os08g03470
Os.55728.1.S1_at--735--9771Chr08:1624772..1624796 (25 bp)
TAAACCTTACTCTCTTACCAACTCT
LOC_Os08g03470
Os.55728.1.S1_at--402--2011Chr08:1624780..1624804 (25 bp)
ACTCTCTTACCAACTCTCTTAAGTT
LOC_Os08g03470
Os.55728.1.S1_at--945--6791Chr08:1624802..1624826 (25 bp)
GTTTTTATGCTAGAAATTTGCCCCA
LOC_Os08g03470
Target Sequence 
GATTGTGTTCCAAGAATGGATGATCTTGGCAATGGTGAGAAGATGCATTTGATGATGCATTTGCTTAAGGCCGGTGACCG
GTATGGATTGGAGAGGCTCAGGATCATGTGCGAGAGATTTCTAGCTACGAACCTCGACACGGAGCATGTATCTGCGATAC
TGGGTCTAGCTGACTTGCTAGATCTCAAGAAGCTCAAGGAAGCTTGCAGGGAGTTCATGGTCCCATCTGAGAGAATGGAT
GCCGTGGCTGCAAGTCAAGGGTACCAGCAGCTGAAGAGAGCATTTCCCTCTCTGGCGTTTGAAGTGTGGGAGAGGAGGAG
CCGTGTTCGCAGGAATTAATTAACATCTTCTTGATTCAGAAGATATATGTGCGCGATGTCTGGAGATTTCCTTTTTGGTT
ATGTTTGTTTTGGTACATTTGATGATCTGACGAATGTTCTCTCAACAATGTGATGACTGATACGGTGCACGCGTGGTTGC
ACCTTAATGTAATGTGGCTATCTGGATCATGCAAATGGTTTTACCTTTAGATCGAGTTGTTTTTTAAACCTTACTCTCTT
ACCAACTCTCTTAAGTTTTTATGCTAGAAATTTGCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis