Browse Element(s) Details


Os.7784.1.S1_at

Description gb:AK058220.1
DB_XREF= gi:32968238
TID=Os.7784.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F09, full insert sequence.
FL= gb:AK058220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3262011/11Pollen-specific protein SF3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32580OsAffx.31985.1.S1_at11/1112+19628407..19631950expressed protein
LOC_Os12g32580Os.33256.1.S1_at1/1112+19628407..19631950expressed protein
LOC_Os12g32590Os.52293.1.S1_at11/1112+19634919..19639227NB-ARC domain containing protein, expressed
LOC_Os12g32600OsAffx.19937.1.S1_at11/1112+19643336..19645788hypothetical protein
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32640Os.54777.1.S1_at11/1112+19666321..19669899Haemolysin-III related family protein, expressed
LOC_Os12g32650Os.7337.1.S2_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S3_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S1_at11/1112+19672493..19679518expressed protein
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7784.1.S1_at--244--2851Chr12:19652820..19652844 (25 bp)
AAGTCTCGAGCGCATTTGCTGGCAC
LOC_Os12g32620
Os.7784.1.S1_at--393--4671Chr12:19652856..19652880 (25 bp)
GCGTGGGATGCAACAAGACAGTCTA
LOC_Os12g32620
Os.7784.1.S1_at--774--4331Chr12:19653147..19653171 (25 bp)
CCATGTATCACAAAAGCTGCTTCAA
LOC_Os12g32620
Os.7784.1.S1_at--946--831Chr12:19653180..19653204 (25 bp)
ATGGAGGATGCACCATTAGCCCCTC
LOC_Os12g32620
Os.7784.1.S1_at--123--10471Chr12:19653195..19653219 (25 bp)
TTAGCCCCTCAAATTACATCGCACA
LOC_Os12g32620
Os.7784.1.S1_at--218--3551Chr12:19653211..19653235 (25 bp)
CATCGCACACGAAGGGAAGCTCTAT
LOC_Os12g32620
Os.7784.1.S1_at--590--5171Chr12:19653237..19653261 (25 bp)
GCAAGCACCACCATATTCAGTTGAT
LOC_Os12g32620
Os.7784.1.S1_at--1004--7611Chr12:19653272..19653296 (25 bp)
GGGAACTTCAGCCAACTTGAGAATG
LOC_Os12g32620
Os.7784.1.S1_at--1020--5291Chr12:19653304..19653328 (25 bp)
GAAGGCATCACAATCTGGATCTGTA
LOC_Os12g32620
Os.7784.1.S1_at--1073--10551Chr12:19653387..19653411 (25 bp)
TTCTTGCTTTTGCTCCAGAGCACCA
LOC_Os12g32620
Os.7784.1.S1_at--225--1371Chr12:19653403..19653427 (25 bp)
AGAGCACCATGTCTTTCTTTGCGCG
LOC_Os12g32620
Target Sequence 
AAGTCTCGAGCGCATTTGCTGGCACGAGAGAGAAATGCGTGGGATGCAACAAGACAGTCTATCCAATTGAAAGGGTTACT
GTCAATAACACCATGTATCACAAAAGCTGCTTCAAGTGCTGTCATGGAGGATGCACCATTAGCCCCTCAAATTACATCGC
ACACGAAGGGAAGCTCTATNGCAAGCACCACCATATTCAGTTGATCAAAGAGAAGGGGAACTTCAGCCAACTTGAGAATG
ACCATGAGAAGGCATCACAATCTGGATCTGTAGAGGATGAAGATTCAGAATATTAGTCCTTTGAGAAATTTCCAGAGATA
AATAATGATCTTCTTGCTTTTGCTCCAGAGCACCATGTCTTTCTTTGCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis