Browse Element(s) Details


OsAffx.11080.1.S1_at

Description gb:NM_188067.1
DB_XREF= gi:34903217
TID=OsAffx.11080.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g165909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11080.1.S1_at--890--6591Chr01:9416606..9416630 (25 bp)
GATTGGCAACAAGCCAACTGCTTGG
LOC_Os01g16590
OsAffx.11080.1.S1_at--836--3251Chr01:9416592..9416616 (25 bp)
CAACTGCTTGGGACTGGATCTGAGA
LOC_Os01g16590
OsAffx.11080.1.S1_at--316--10451Chr01:9416276..9416300 (25 bp)
TTAGAATCCATCTTCTGGTGGCCGG
LOC_Os01g16590
OsAffx.11080.1.S1_at--844--3591Chr01:9416233..9416257 (25 bp)
CATTGTGCCAGAGGGTCAGCGACAT
LOC_Os01g16590
OsAffx.11080.1.S1_at--138--9671Chr01:9416218..9416242 (25 bp)
TCAGCGACATCTACTTGGCGCTCAA
LOC_Os01g16590
OsAffx.11080.1.S1_at--45--9731Chr01:9416197..9416221 (25 bp)
TCAATCCGGCGGCACACAAGGCGTG
LOC_Os01g16590
OsAffx.11080.1.S1_at--650--2211Chr01:9416182..9416206 (25 bp)
ACAAGGCGTGCATGCTACTAGAGCG
LOC_Os01g16590
OsAffx.11080.1.S1_at--437--9891Chr01:9416167..9416191 (25 bp)
TACTAGAGCGCTACCGGAGGATACA
LOC_Os01g16590
OsAffx.11080.1.S1_at--283--4131Chr01:9416135..9416159 (25 bp)
CGCAGGGCGGCAATGGAACGCTATC
LOC_Os01g16590
OsAffx.11080.1.S1_at--1079--6151Chr01:9416058..9416082 (25 bp)
GAGGTTGGTGAAGCGCGCACTCATC
NONE
OsAffx.11080.1.S1_at--399--5991Chr01:9416015..9416039 (25 bp)
GAGACGGCCATGCTTGGGCTCACCC
NONE
Target Sequence 
GATTGGCAACAAGCCAACTGCTTGGGACTGGATCTGAGAAGAAAAGGTGGAAAAGGGAGAAGAGAGAAAGGGAAAAGGTG
AAAGGGGGAGGAGGAAACAGGGAGGAGTTGACATGCAAAAATGGGTGGAGGTCCACCCAAGAAATTAGAATCCATCTTCT
GGTGGCCGGGGTACGTGGAGGCGAGGCCATTGTGCCAGAGGGTCAGCGACATCTACTTGGCGCTCAATCCGGCGGCACAC
AAGGCGTGCATGCTACTAGAGCGCTACCGGAGGATACAAGCGCGGCGCAGGGCGGCAATGGAACGCTATCGGAGGATGCG
AGTGCAACGCAGAGTTGATGTTGTGCAGTGGCGGCGGAAGAAGAGGTTGGTGAAGCGCGCACTCATCTTCGTCTTGCCGG
CCTTGGAGACGGCCATGCTTGGGCTCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis