Browse Element(s) Details


OsAffx.12240.1.S1_at

Description tigr:9630.m02654
TID=OsAffx.12240.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2790010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27850Os.14861.2.S1_at9/112+16481976..16487633expressed protein
LOC_Os02g27850Os.14861.2.S1_x_at6/112+16481976..16487633expressed protein
LOC_Os02g27850Os.50367.1.A1_at5/112+16481976..16487633expressed protein
LOC_Os02g27870Os.19231.1.A1_s_at11/112+16487690..16495255expressed protein
LOC_Os02g27870Os.7388.2.S1_x_at1/112+16487690..16495255expressed protein
LOC_Os02g27880OsAffx.24468.1.S1_at10/112+16495886..16501371EF hand family protein
LOC_Os02g27880OsAffx.24466.1.S1_x_at2/112+16495886..16501371EF hand family protein
LOC_Os02g27880OsAffx.25325.1.S1_at1/112+16495886..16501371EF hand family protein
LOC_Os02g27890NANA2+16503874..16504341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27900OsAffx.12240.1.S1_at10/112+16508771..16509758hypothetical protein
LOC_Os02g27910OsAffx.24469.1.S1_x_at1/112+16511719..16512318hypothetical protein
LOC_Os02g27920OsAffx.24470.1.S1_at10/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920Os.38751.1.A1_at6/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.24466.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.30280.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.27810.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.1.S1_at8/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.5.S1_x_at6/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.4.S1_x_at2/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.3.S1_s_at1/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27940OsAffx.24466.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27940OsAffx.8338.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27950Os.51622.1.S1_at11/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27950Os.7302.1.S1_at10/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12240.1.S1_at--1034--9511Chr02:16508817..16508841 (25 bp)
TCTCTCACTTTCTCTGGCGCGGCAA
LOC_Os02g27900
OsAffx.12240.1.S1_at--126--6211Chr02:16509410..16509431 (22 bp)
GAGGCAGCGCACGATATGATCCTAT
LOC_Os02g27900
OsAffx.12240.1.S1_at--527--6371Chr02:16509424..16509448 (25 bp)
GATCCTATGTTACCGTGTGTCAGAA
LOC_Os02g27900
OsAffx.12240.1.S1_at--289--10051Chr02:16509429..16509453 (25 bp)
TATGTTACCGTGTGTCAGAACGAAC
LOC_Os02g27900
OsAffx.12240.1.S1_at--1157--8711Chr02:16509441..16509465 (25 bp)
TGTCAGAACGAACACCCGGTATCAT
LOC_Os02g27900
OsAffx.12240.1.S1_at--564--5491Chr02:16509450..16509474 (25 bp)
GAACACCCGGTATCATTTGGGACGT
LOC_Os02g27900
OsAffx.12240.1.S1_at--690--6871Chr02:16509459..16509483 (25 bp)
GTATCATTTGGGACGTTACCGAGTG
LOC_Os02g27900
OsAffx.12240.1.S1_at--372--7631Chr02:16509468..16509492 (25 bp)
GGGACGTTACCGAGTGTGATCACAT
LOC_Os02g27900
OsAffx.12240.1.S1_at--1154--6111NONE
GAGTGTGATCACATACGCACGGAAA
NONE
OsAffx.12240.1.S1_at--589--6451Chr02:16509485..16509711 (25 bp)
GATCACATACGCACGGAAATGAAAT
LOC_Os02g27900
OsAffx.12240.1.S1_at--1159--5571Chr02:16509702..16509726 (25 bp)
GAAATGAAATCTGCTTCCAATGAGA
LOC_Os02g27900
Target Sequence 
TCTCTCACTTTCTCTGGCGCGGCAACGAGCCAGGCGCAGGCGGGCACCGCAGTGGTGGGCGTGGAGGCAAAGGCGGGCCA
GGCGCCATGGCGGTGGACACAAAGGTGGAGGCAGCGCACGATATGATCCTATGTTACCGTGTGTCAGAACGAACACCCGG
TATCATTTGGGACGTTACCGAGTGTGATCACATACGCACGGAAATGAAATCTGCTTCCAATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis