Browse Element(s) Details


OsAffx.15115.1.S1_at

Description tigr:9633.m04284
TID=OsAffx.15115.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4570011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45630OsAffx.22947.1.S1_x_at8/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.2.S1_x_at7/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.3.S1_x_at6/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_x_at4/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_at2/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45640NANA5+26370048..26372649retrotransposon protein, putative, unclassified
LOC_Os05g45650Os.28943.1.S1_x_at1/115+26373275..26376489retrotransposon protein, putative, unclassified
LOC_Os05g45660Os.6808.1.S1_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660OsAffx.15114.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45660Os.6808.1.S1_x_at11/115+26380892..26384101Hyaluronan/mRNA binding family protein, expressed
LOC_Os05g45670OsAffx.27328.1.S1_at11/115+26384268..26385706hypothetical protein
LOC_Os05g45680OsAffx.17941.1.A1_s_at1/115+26386778..26387935retrotransposon protein, putative, unclassified
LOC_Os05g45690Os.55202.1.S1_at9/115+26388945..26390509expressed protein
LOC_Os05g45700OsAffx.15115.1.S1_at11/115+26391379..26394498hypothetical protein
LOC_Os05g45710Os.48286.1.A1_at11/115+26396796..26398068serine O-acetyltransferase family protein, expressed
LOC_Os05g45720Os.11849.1.S1_at10/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45720Os.46824.2.S1_at7/115+26402549..26410834glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os05g45730OsAffx.27330.1.S1_s_at11/115+26411244..26413945NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g45740OsAffx.15116.1.S1_at11/115+26414438..26416344mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os05g45750Os.27618.1.S1_at11/115+26417303..26421001ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15115.1.S1_at--284--6271Chr05:26392477..26392557 (25 bp)
GATGTGTGCCATATTCTGATGTCTA
LOC_Os05g45700
OsAffx.15115.1.S1_at--1071--6871Chr05:26392419..26392441 (23 bp)
GTATTATGCTTGTCCATTTCTGTGC
LOC_Os05g45700
OsAffx.15115.1.S1_at--329--10591Chr05:26391861..26391881 (21 bp)
TTCTGTGCAAGCGATCCTGGAGTAC
LOC_Os05g45700
OsAffx.15115.1.S1_at--205--9251Chr05:26391820..26391844 (25 bp)
TCCTTCGATCTATGCAACTCTTGGG
LOC_Os05g45700
OsAffx.15115.1.S1_at--965--5631Chr05:26391788..26391812 (25 bp)
GACACGCTTTCATGGCGCTGGGAGA
LOC_Os05g45700
OsAffx.15115.1.S1_at--305--9451Chr05:26391688..26391712 (25 bp)
TCTGGAAGTCTTTGGCACGGTGGCA
LOC_Os05g45700
OsAffx.15115.1.S1_at--31--8831Chr05:26391619..26391643 (25 bp)
TGTTGGACAGTGTACCGTCTTCGGA
LOC_Os05g45700
OsAffx.15115.1.S1_at--501--8031Chr05:26391597..26391621 (25 bp)
GGAGTCGTGGTATATCGCACCCGGC
LOC_Os05g45700
OsAffx.15115.1.S1_at--513--4731Chr05:26391570..26391594 (25 bp)
GCTGTCTTCTCTGTGATCAATACGA
LOC_Os05g45700
OsAffx.15115.1.S1_at--846--5911Chr05:26391480..26391504 (25 bp)
GAGCTATTGGGCATTCTGAGTGTTT
LOC_Os05g45700
OsAffx.15115.1.S1_at--566--111Chr05:26391432..26391456 (25 bp)
ATTCTTGGTTGTATCACAGTCGCAA
LOC_Os05g45700
Target Sequence 
GATGTGTGCCATATTCTGATGTCTATTTGAACTATAAGATCTTAGAAGCATACGTTGGCTGTATTATGCTTGTCCATTTC
TGTGCAAGCGATCCTGGAGTACTTCAAGCTTTGGGACCTCCTTCGATCTATGCAACTCTTGGGGGAACCCGACACGCTTT
CATGGCGCTGGGAGACCTCGGGACTGTACTTCTCCCGCTCGGCGTATCGTGTCCTCTTCTTTGGAAGAACTCGCCTCCAA
CACAAGCCAATCTGGAAGTCTTTGGCACGGTGGCACCCCTTGTTGTTGGTACTTCCTTTGGTTGGTCGCCCTTAACCGCT
GTTGGACAGTGTACCGTCTTCGGAGTCGTGGTATATCGCACCCGGCTCGCTGTCTTCTCTGTGATCAATACGACGAAACG
ATTGATCATCTCTTGGTCGCATGCCCGGAGTCTCGCCAGCTGTGGTGGATTGCTCTTAGAGCTATTGGGCATTCTGAGTG
TTTACCACTCAACGAGCAATCTTTTCATTCTTGGTTGTATCACAGTCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis