Browse Element(s) Details


OsAffx.22708.1.S1_at

Description gb:NM_188066.1
DB_XREF= gi:34903215
TID=OsAffx.22708.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1658011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16540Os.10190.1.S1_at11/111+9382980..9387394RUB-activating enzyme, putative, expressed
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22708.1.S1_at--3--5132Chr01:9412374..9412423 (25 bp)
GCACACAAGATCTCGATTTGACCAT
LOC_Os01g16580
OsAffx.22708.1.S1_at--637--2191Chr01:9412376..9412425 (25 bp)
ACACAAGATCTCGATTTGACCATGA
LOC_Os01g16580
OsAffx.22708.1.S1_at--979--2191Chr01:9412378..9412427 (25 bp)
ACAAGATCTCGATTTGACCATGACG
LOC_Os01g16580
OsAffx.22708.1.S1_at--328--3231Chr01:9412379..9412428 (25 bp)
CAAGATCTCGATTTGACCATGACGG
LOC_Os01g16580
OsAffx.22708.1.S1_at--282--2811Chr01:9412150..9412429 (25 bp)
AAGATCTCGATTTGACCATGACGGG
LOC_Os01g16580
OsAffx.22708.1.S1_at--1103--1271Chr01:9412151..9412430 (25 bp)
AGATCTCGATTTGACCATGACGGGA
LOC_Os01g16580
OsAffx.22708.1.S1_at--180--6411Chr01:9412152..9412431 (25 bp)
GATCTCGATTTGACCATGACGGGAT
LOC_Os01g16580
OsAffx.22708.1.S1_at--363--451Chr01:9412413..9412432 (20 bp)
ATCTCGATTTGACCATGACGGGATA
LOC_Os01g16580
OsAffx.22708.1.S1_at--1125--9491Chr01:9412413..9412433 (21 bp)
TCTCGATTTGACCATGACGGGATAT
LOC_Os01g16580
OsAffx.22708.1.S1_at--688--3791Chr01:9412413..9412434 (22 bp)
CTCGATTTGACCATGACGGGATATG
LOC_Os01g16580
OsAffx.22708.1.S1_at--263--4051Chr01:9412413..9412436 (24 bp)
CGATTTGACCATGACGGGATATGCT
LOC_Os01g16580
Target Sequence 
GCACACAAGATCTCGATTTGACCATGACGGGATATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis