Browse Element(s) Details


OsAffx.22770.3.S1_x_at

Description gb:NM_184375.1
DB_XREF= gi:34895839
GEN=P0434B04.30
TID=OsAffx.22770.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase Xa21 (P0434B04.30), mRNA.
PROD=putative protein kinase Xa21
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0564011/11Leucine Rich Repeat family protein
LOC_Os01g059402/11Leucine Rich Repeat family protein, expressed
LOC_Os01g059801/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05580OsAffx.26236.1.S1_at3/111+2660341..2660874expressed protein
LOC_Os01g05590Os.35005.2.S1_at11/111+2663306..2664587retrotransposon protein, putative, LINE subclass
LOC_Os01g05600Os.33469.1.S2_at3/111+2666754..2669726NBS-LRR disease resistance protein, putative
LOC_Os01g05610Os.19803.4.S1_at10/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05610OsAffx.10929.1.S1_x_at7/111+2671203..2672174Histone H2B.2, putative, expressed
LOC_Os01g05620Os.33469.1.S2_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05620Os.33469.1.S1_at11/111+2678821..2683166NBS-LRR disease resistance protein, putative, expressed
LOC_Os01g05630Os.19803.4.S1_at9/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05630OsAffx.10929.1.S1_x_at7/111+2683531..2684499Histone H2B.2, putative, expressed
LOC_Os01g05640OsAffx.22770.3.S1_x_at11/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.1.S1_x_at2/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05640OsAffx.22770.4.S1_at1/111+2685425..2688744Leucine Rich Repeat family protein
LOC_Os01g05650Os.46398.1.S1_s_at9/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.5523.1.S1_x_at5/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_x_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05650Os.35005.1.S1_at2/111+2690331..2691774Metallothionein-like protein type 2, putative
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22770.3.S1_x_at--77--10553Chr01:2832370..2832394 (25 bp)
TTCATGCCCAATGGTAGCTTGGATG
LOC_Os01g05940
OsAffx.22770.3.S1_x_at--1045--8551Chr01:2686272..2686296 (25 bp)
TGGATGGTTGGATTCATCCCAAGTC
LOC_Os01g05640
OsAffx.22770.3.S1_x_at--213--2851Chr01:2686252..2686276 (25 bp)
AAGTCAAGCAATCTCACTCCTAGCA
LOC_Os01g05640
OsAffx.22770.3.S1_x_at--977--2071Chr01:2686200..2686224 (25 bp)
ACATTGCTGTTGATATCTTTGATGC
LOC_Os01g05640
OsAffx.22770.3.S1_x_at--252--6551Chr01:2686171..2686195 (25 bp)
GATTATCTTCACAATCACTGCCAGC
LOC_Os01g05640
OsAffx.22770.3.S1_x_at--1156--3371Chr01:2686150..2686174 (25 bp)
CAGCCACCAATCATACACTGTGATC
LOC_Os01g05640
OsAffx.22770.3.S1_x_at--893--351Chr01:2686064..2686088 (25 bp)
ATCAAGAATCCTCCCGAAAAGTAGT
LOC_Os01g05640
OsAffx.22770.3.S1_x_at--129--71Chr01:2685658..2686006 (25 bp)
ATTGCACCAGACATAGCTGATCCAA
LOC_Os01g05640
OsAffx.22770.3.S1_x_at--361--9471Chr01:2685550..2685574 (25 bp)
TCTGTTCTTAGGCTCGGCATATCAT
LOC_Os01g05640
OsAffx.22770.3.S1_x_at--1099--4731Chr01:2685484..2685508 (25 bp)
GCTGTATCAGAGATGCATGCAACCA
LOC_Os01g05640
OsAffx.22770.3.S1_x_at--226--9014Chr01:2851976..2851999 (24 bp)
TGAATATCTCAGGTCTTGGATGGTC
LOC_Os01g05980
Target Sequence 
TTCATGCCCAATGGTAGCTTGGATGGTTGGATTCATCCCAAGTCAAGCAATCTCACTCCTAGCAATACACTCAGCCTTTC
ACAGAGACTCAACATTGCTGTTGATATCTTTGATGCACTGGATTATCTTCACAATCACTGCCAGCCACCAATCATACACT
GTGATCTGAAACCTAGTAATATTCTTCTATCAGAAGACAAGAGTGCTAAGGTTGGAGATTTTGGCATATCAAGAATCCTC
CCGAAAAGTAGTACTAAAACTCTTCAAAGTTCGAAAAGCTCAATTGGAATCAGAGGTTCCATTGGTTATATTGCACCAGA
CATAGCTGATCCAACAATCTGGCTTCATGAAGAAGAAAATGTTGCAGATGTTAAAAATGAAAGCATAAAAACAAGAATTA
TTCAACAGTGCTTGGTGTCTGTTCTTAGGCTCGGCATATCATGCTCAAAGCAACAACCCAGAGAGCGAATGATGTTGGCA
GAAGCTGTATCAGAGATGCATGCAACCAGAGATGAATATCTCAGGTCTTGGATGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22770.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis