Browse Element(s) Details


OsAffx.23039.1.S1_x_at

Description gb:AK063155.1
DB_XREF= gi:32973173
TID=OsAffx.23039.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H11, full insert sequence.
FL= gb:AK059477.1 gb:AK072149.1 gb:AK063155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g579741/11retrotransposon protein, putative, unclassified
LOC_Os04g135601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57950OsAffx.32337.1.S1_x_at11/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57950Os.26688.1.S2_s_at10/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57960OsAffx.2355.1.S1_at1/111+33833519..33835701retrotransposon protein, putative, unclassified, expressed
LOC_Os01g57974OsAffx.32214.1.S1_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.26050.2.S2_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_x_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.23039.1.S1_x_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.2020.1.S1_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57990OsAffx.11641.1.S1_s_at11/111+33862980..33863697hypothetical protein
LOC_Os01g57990OsAffx.11641.1.S1_at9/111+33862980..33863697hypothetical protein
LOC_Os01g58000OsAffx.30475.9.S1_s_at11/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58000OsAffx.30475.1.S1_s_at5/111+33866764..33867276ATP synthase epsilon chain, putative, expressed
LOC_Os01g58010OsAffx.32284.1.S1_x_at11/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58010OsAffx.21694.3.S1_x_at6/111+33876313..33877296ATP synthase a chain, putative
LOC_Os01g58020OsAffx.26050.37.S1_s_at11/111+33880750..33881636Ribulose bisphosphate carboxylase large chain precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23039.1.S1_x_at--1045--37515Chr12:20909039..20909063 (25 bp)
CCGGGTTATTCTATTCCACTTCTAG
NONE
OsAffx.23039.1.S1_x_at--159--104110Chr10:10473757..10473781 (25 bp)
TTATACAAAACACCTATCCCGAGCA
NONE
OsAffx.23039.1.S1_x_at--86--5959Chr10:10473777..10473801 (25 bp)
GAGCACACGCAAGGGAACCATAGAT
NONE
OsAffx.23039.1.S1_x_at--1126--31111Chr10:10473829..10473853 (25 bp)
AATTTGATCCATGGACGGCACCGTT
NONE
OsAffx.23039.1.S1_x_at--405--34311Chr10:10473873..10473897 (25 bp)
CAGAGGAATCATTACCGCAAGGCAT
NONE
OsAffx.23039.1.S1_x_at--1037--71112Chr10:10473908..10473932 (25 bp)
GTCATAAGCGCCTATACCGTAAAAT
NONE
OsAffx.23039.1.S1_x_at--380--40911Chr10:10473987..10474011 (25 bp)
CGACCCTAATCGAAATGCGTACATT
NONE
OsAffx.23039.1.S1_x_at--377--46511Chr10:10474003..10474027 (25 bp)
GCGTACATTTGTCTCATACACTATG
NONE
OsAffx.23039.1.S1_x_at--947--7711Chr10:10474114..10474135 (22 bp)
ATGGGAAATGCCCTACCTTTGACCG
NONE
OsAffx.23039.1.S1_x_at--533--9971NONE
TACCTTTGACCGATATGCCCTTAGG
NONE
OsAffx.23039.1.S1_x_at--946--100915Chr12:16630665..16630689 (25 bp)
TAGGCACGGCCATACATAACATAGA
NONE
Target Sequence 
CCGGGTTATTCTATTCCACTTCTAGATAGAGAAAAAAACTAAAGGAGAATACTTAATAATATGGCGAAACATTTATACAA
AACACCTATCCCGAGCACACGCAAGGGAACCATAGATAGGCAAGTGAAATCCAATCCACGAAATAATTTGATCCATGGAC
GGCACCGTTGTGGTAAAGGTCGTAATTCCAGAGGAATCATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGCCTATAC
CGTAAAATCGATTTTCGACGGAATCAAAAAGACATATCTGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGC
GTACATTTGTCTCATACACTATGGGGATGGTGAGAAGGGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACTA
TTGTTTCTGGTACAAAAGTTCCTATATCAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACAT
AACATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23039.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis