Browse Element(s) Details


OsAffx.23090.1.S1_x_at

Description tigr:9629.m00144
TID=OsAffx.23090.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g023604/11LRK33, putative, expressed
LOC_Os01g026902/11rust resistance kinase Lr10, putative
LOC_Os01g024602/11receptor kinase LRK14, putative
LOC_Os01g028101/11receptor kinase LRK14, putative
LOC_Os01g027501/11receptor kinase LRK14, putative
LOC_Os01g027701/11YRK1, putative, expressed
LOC_Os01g024401/11Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g024201/11LRK14, putative
LOC_Os01g028401/11LRK14, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02320Os.34013.2.S1_x_at11/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320Os.34013.1.S1_at10/111+727952..734822TAK14, putative, expressed
LOC_Os01g02320OsAffx.22827.1.S1_x_at1/111+727952..734822TAK14, putative, expressed
LOC_Os01g02340Os.37621.3.S1_at11/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02340OsAffx.10878.2.S1_x_at1/111+735730..738023Thaumatin family protein, expressed
LOC_Os01g02350OsAffx.22827.1.S1_x_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.40177.1.S1_at11/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02350Os.34013.2.S1_x_at2/111+739483..741958receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02360Os.45539.1.S1_at11/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.1.S1_x_at4/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.4.S1_x_at3/111+742254..745747LRK33, putative, expressed
LOC_Os01g02360OsAffx.23090.2.S1_x_at1/111+742254..745747LRK33, putative, expressed
LOC_Os01g02370Os.52696.1.S1_at10/111+748882..751794receptor-like kinase ARK1AS, putative, expressed
LOC_Os01g02380NANA1+753696..758852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02390Os.1849.1.S1_at11/111+763983..766475TAK14, putative, expressed
LOC_Os01g02390OsAffx.10882.2.S1_x_at3/111+763983..766475TAK14, putative, expressed
LOC_Os01g02400Os.1977.1.S1_a_at11/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02400Os.1977.3.S1_x_at9/111+767134..770651Ser/Thr receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009621biological_processresponse to pathogenic fungi
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23090.1.S1_x_at--701--8310Chr01:733324..733348 (25 bp)
AGGCATTGCCCGAGGAATGGAGTAC
NONE
OsAffx.23090.1.S1_x_at--784--4454Chr01:915969..915993 (25 bp)
GCCTCATAATATCTTGCTGGACTAT
LOC_Os01g02690
OsAffx.23090.1.S1_x_at--1008--8691Chr01:733458..733482 (25 bp)
TGTGCCCAAGGGACCAAAGCATTAT
NONE
OsAffx.23090.1.S1_x_at--274--3451Chr01:733576..733600 (25 bp)
CAGTTTTGGCATGGTTGTTTTAGAA
NONE
OsAffx.23090.1.S1_x_at--769--1611Chr01:733619..733643 (25 bp)
AGCTGGGACCCAAGTATTGAGAACC
NONE
OsAffx.23090.1.S1_x_at--212--10491Chr01:733686..733710 (25 bp)
TTACAGAGCAGGACTTCATACTTAG
NONE
OsAffx.23090.1.S1_x_at--993--2292Chr01:745208..745232 (25 bp)
AAATGGTGAGACAGCTGGCCCTTGT
LOC_Os01g02360
OsAffx.23090.1.S1_x_at--514--7492Chr01:733768..733792 (25 bp)
GTGGTGTATTCAGTGGAACCCAAGA
NONE
OsAffx.23090.1.S1_x_at--296--491Chr01:733794..733818 (25 bp)
ATCGGCCCTCAATGACAAAGGCTGT
NONE
OsAffx.23090.1.S1_x_at--545--6671Chr01:733837..733861 (25 bp)
GTTGCAGAACATACAGGTGCCTCCT
NONE
OsAffx.23090.1.S1_x_at--1044--3511Chr01:733846..733870 (25 bp)
CATACAGGTGCCTCCTAAGCCATTT
NONE
Target Sequence 
AGGCATTGCCCGAGGAATGGAGTACCTGCATCAAGGATGCAACCAGCGCATCCTCCACTTTGATATCAAGCCTCATAATA
TCTTGCTGGACTATAACTTCAGTCCAAAGATTTCGGACTTTGGTCTTGCAAAGCTGTGCCCAAGGGACCAAAGCATTATT
ACCTTGACCAAAGCAAGAGGCACAATGGGATACATTGCACCGGAGCTATATTCTAGGAACTTTGGGGAGATATCTTACAA
GTCAGATGTTTACAGTTTTGGCATGGTTGTTTTAGAAATGGTGAGTGGAAGGAGGAGCTGGGACCCAAGTATTGAGAACC
AAAATGAGGTATACTTTCCAGAGTGGATCTATGAGAAAGTAATTACAGAGCAGGACTTCATACTTAGTAGGGAAATGACA
GAAGAAGAGAAACAAATGGTGAGACAGCTGGCCCTTGTGGCACTGTGGTGTATTCAGTGGAACCCAAGAAATCGGCCCTC
AATGACAAAGGCTGTAAACATGATAACTGGAAGGTTGCAGAACATACAGGTGCCTCCTAAGCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23090.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis