Browse Element(s) Details


OsAffx.23277.1.S1_at

Description gb:NM_188072.1
DB_XREF= gi:34903227
TID=OsAffx.23277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1662010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23277.1.S1_at--1014--10331Chr01:9429056..9429405 (25 bp)
TTTAGCAGCAGTTCCTAACCAGAGA
LOC_Os01g16620
OsAffx.23277.1.S1_at--854--6571Chr01:9429046..9429070 (25 bp)
GTTCCTAACCAGAGATTCGTACCTT
LOC_Os01g16620
OsAffx.23277.1.S1_at--368--91Chr01:9429032..9429056 (25 bp)
ATTCGTACCTTTCATCTTCATGGCA
LOC_Os01g16620
OsAffx.23277.1.S1_at--176--10591NONE
TTCTCTACCACTGCTGGGCAGCATT
NONE
OsAffx.23277.1.S1_at--905--3851Chr01:9428734..9428758 (25 bp)
CTGAGAGCGCGGGTAAGCTTGATTT
LOC_Os01g16620
OsAffx.23277.1.S1_at--883--1531Chr01:9428719..9428743 (25 bp)
AGCTTGATTTTAGCAGAGGATGGCT
LOC_Os01g16620
OsAffx.23277.1.S1_at--72--8551Chr01:9428695..9428719 (25 bp)
TGGAGCAGCCGCAGATCACCTGCCA
LOC_Os01g16620
OsAffx.23277.1.S1_at--891--4511Chr01:9428688..9428712 (25 bp)
GCCGCAGATCACCTGCCACGAGTTA
LOC_Os01g16620
OsAffx.23277.1.S1_at--283--9931Chr01:9428665..9428689 (25 bp)
TACTGGACGAAGAACTCCGAGCCGT
LOC_Os01g16620
OsAffx.23277.1.S1_at--26--5371Chr01:9428657..9428681 (25 bp)
GAAGAACTCCGAGCCGTGGTAGAAT
LOC_Os01g16620
OsAffx.23277.1.S1_at--428--3811Chr01:9428651..9428675 (25 bp)
CTCCGAGCCGTGGTAGAATTAGATA
LOC_Os01g16620
Target Sequence 
TTTAGCAGCAGTTCCTAACCAGAGATTCGTACCTTTCATCTTCATGGCAGCATGTGAACGACTTATCCTACTGAACCACG
ATCCCCGTGAACTGAGGGATTATGCCGCCCTTCTCTACCACTGCTGGGCAGCATTGGAACAATCCGCTGGAGATCATGGA
GGACGAAGCGGTGAACACCCTGAGAGCGCGGGTAAGCTTGATTTTAGCAGAGGATGGCTGGAGCAGCCGCAGATCACCTG
CCACGAGTTACTGGACGAAGAACTCCGAGCCGTGGTAGAATTAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis