Browse Element(s) Details


OsAffx.26368.1.S1_at

Description tigr:9632.m03555
TID=OsAffx.26368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to histone h3 (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3778011/11Core histone H2A/H2B/H3/H4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37720Os.51133.1.S1_at11/114+22213100..22215670pentatricopeptide, putative, expressed
LOC_Os04g37730OsAffx.31683.2.S1_at11/114+22216445..22217792Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37740Os.49513.1.S1_at10/114+22222945..22224613Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g37750Os.50850.1.S1_at11/114+22226251..22228352expressed protein
LOC_Os04g37760OsAffx.26367.1.S1_at11/114+22229073..22231462expressed protein
LOC_Os04g37770NANA4+22232953..22233534transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g37780OsAffx.26368.1.S1_at11/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780OsAffx.17542.1.S1_at3/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.12813.3.S1_x_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.22592.1.S1_a_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37780Os.6901.1.S1_at1/114+22239438..22244670Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os04g37790Os.27197.2.A1_at11/114+22247734..22249941expressed protein
LOC_Os04g37800OsAffx.26369.1.S1_at11/114+22252021..22252395hypothetical protein
LOC_Os04g37810Os.16596.1.S1_at10/114+22253115..22260343expressed protein
LOC_Os04g37820Os.51127.1.S1_a_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os04g37820Os.51127.2.S1_x_at11/114+22262418..22264132Cytokinin-O-glucosyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26368.1.S1_at--762--8931Chr04:22243993..22244017 (25 bp)
TGCCACCAAGGTATGTTTTTCGACA
LOC_Os04g37780
OsAffx.26368.1.S1_at--1152--8771Chr04:22244006..22244030 (25 bp)
TGTTTTTCGACATGATACCCTGCAC
LOC_Os04g37780
OsAffx.26368.1.S1_at--1059--6471Chr04:22244019..22244043 (25 bp)
GATACCCTGCACATATCAATTGCCA
LOC_Os04g37780
OsAffx.26368.1.S1_at--1068--3171Chr04:22244035..22244059 (25 bp)
CAATTGCCAAGGTGTTAATACTGTT
LOC_Os04g37780
OsAffx.26368.1.S1_at--550--9751Chr04:22244050..22244074 (25 bp)
TAATACTGTTGAACTGTGCTAAACT
LOC_Os04g37780
OsAffx.26368.1.S1_at--378--7311Chr04:22244065..22244089 (25 bp)
GTGCTAAACTTACTGCTAGCGTTTT
LOC_Os04g37780
OsAffx.26368.1.S1_at--895--9911Chr04:22244075..22244099 (25 bp)
TACTGCTAGCGTTTTGATTATGTCA
LOC_Os04g37780
OsAffx.26368.1.S1_at--754--6551Chr04:22244090..22244158 (25 bp)
GATTATGTCAGCTGCTCGTAAGTCT
LOC_Os04g37780
OsAffx.26368.1.S1_at--812--9951Chr04:22244195..22244219 (25 bp)
TACCCGCCCTGGAAACGTTGCTCTT
LOC_Os04g37780
OsAffx.26368.1.S1_at--1100--8511Chr04:22244204..22244506 (25 bp)
TGGAAACGTTGCTCTTCGACTGATC
LOC_Os04g37780
OsAffx.26368.1.S1_at--964--6671Chr04:22244211..22244513 (25 bp)
GTTGCTCTTCGACTGATCTTCGTTT
LOC_Os04g37780
Target Sequence 
TGCCACCAAGGTATGTTTTTCGACATGATACCCTGCACATATCAATTGCCAAGGTGTTAATACTGTTGAACTGTGCTAAA
CTTACTGCTAGCGTTTTGATTATGTCAGCTGCTCGTAAGTCTGCTCCCACAACTGGAGGAGTGAAGAAGCCTCACCGTTA
CCCGCCCTGGAAACGTTGCTCTTCGACTGATCTTCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis