Browse Element(s) Details


OsAffx.5479.1.S1_at

Description tigr:9635.m02827
TID=OsAffx.5479.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2906011/11hypothetical protein
LOC_Os11g207801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29000Os.26886.1.S1_x_at8/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29000Os.26886.3.S1_x_at6/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29000OsAffx.16244.1.S1_x_at1/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29010NANA7+17015413..17016984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29020NANA7+17019392..17020946hypothetical protein
LOC_Os07g29030Os.26886.6.S1_s_at11/117+17022923..17025343hypothetical protein
LOC_Os07g29030Os.26886.2.S1_s_at11/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.16467.1.S1_at7/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.8338.1.S1_x_at3/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.8469.1.S1_x_at2/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.3425.1.S1_at1/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.10020.1.S1_x_at1/117+17022923..17025343hypothetical protein
LOC_Os07g29040OsAffx.28654.1.S1_at8/117+17027048..17027537hypothetical protein
LOC_Os07g29050OsAffx.5478.1.S1_at10/117+17028739..17030885hypothetical protein
LOC_Os07g29060OsAffx.5479.1.S1_at11/117+17035157..17037393hypothetical protein
LOC_Os07g29060Os.23212.1.S1_at2/117+17035157..17037393hypothetical protein
LOC_Os07g29060Os.18229.3.S1_x_at1/117+17035157..17037393hypothetical protein
LOC_Os07g29070OsAffx.16468.1.S1_at11/117+17037743..17039222calcineurin-like phosphoesterase family protein, putative
LOC_Os07g29080OsAffx.18924.2.S1_x_at7/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29080OsAffx.19842.1.S1_at1/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29080OsAffx.19421.1.S1_at1/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29080OsAffx.18924.3.S1_at1/117+17039918..17042552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29090OsAffx.19421.2.S1_at2/117+17042624..17043496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29090OsAffx.31898.1.S1_at1/117+17042624..17043496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.20497.1.S1_at3/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.3348.1.S1_at1/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.31287.1.S1_at1/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29100OsAffx.22387.1.S1_at1/117+17046432..17049662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29110OsAffx.28655.1.S1_at11/117+17051518..17052001hypothetical protein
LOC_Os07g29120OsAffx.19542.3.S1_x_at2/117+17052207..17057495retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29130NANA7+17059536..17061131retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5479.1.S1_at--359--6272Chr11:12008792..12008815 (24 bp)
GATGTAGGTCCAACGATGCCGTCGA
LOC_Os11g20780
OsAffx.5479.1.S1_at--1049--9631Chr07:17036337..17036361 (25 bp)
TCAGGGCCACCAACACGCGGAGGAA
LOC_Os07g29060
OsAffx.5479.1.S1_at--489--931Chr07:17036206..17036230 (25 bp)
AGGCAGTTGAGCTCGGTTCCTCCCA
LOC_Os07g29060
OsAffx.5479.1.S1_at--843--891Chr07:17036067..17036091 (25 bp)
AGGCGGGCACCTTCACAGGACTGGA
LOC_Os07g29060
OsAffx.5479.1.S1_at--20--972Chr07:17036051..17036075 (25 bp)
AGGACTGGAGGTTCACTCCCGATGT
LOC_Os07g29060
OsAffx.5479.1.S1_at--1142--2431Chr07:17035285..17035309 (25 bp)
AAAATGGCGCTGACCTATCGATGCT
LOC_Os07g29060
OsAffx.5479.1.S1_at--1093--5831Chr07:17035274..17035298 (25 bp)
GACCTATCGATGCTCAACGCTATAT
LOC_Os07g29060
OsAffx.5479.1.S1_at--343--4131Chr07:17035257..17035281 (25 bp)
CGCTATATTTGCTGGCGCTGAGCTA
LOC_Os07g29060
OsAffx.5479.1.S1_at--723--4751Chr07:17035241..17035265 (25 bp)
GCTGAGCTACTCCAGTGGCTGTGCT
LOC_Os07g29060
OsAffx.5479.1.S1_at--1139--5711Chr07:17035202..17035226 (25 bp)
GACTGTCGCGGCTAGGTCGAATCTC
LOC_Os07g29060
OsAffx.5479.1.S1_at--308--10091Chr07:17035190..17035214 (25 bp)
TAGGTCGAATCTCAGCGCCAGCTCT
LOC_Os07g29060
Target Sequence 
GATGTAGGTCCAACGATGCCGTCGATCAACTTCAGGGCCACCAACACGCGGAGGAACACGCGGAGCCAGAGGAAGACCAA
GAGGTGGACGGCGAGGAGGCGGAGGAAGACCAAGAGGTGGACGGTGAGGAGGCGGAGGAAGACGAGGAGGCAGGGGAAGA
AGAGGCAGTTGAGCTCGGTTCCTCCCAGCGGGGCCATCGCAGGCGGGGCCATCGCAGGCGGGGCCATCGCAGGCGGGGCC
ATCGCAGGCGGGGCCATCGCAGGCGGGGCCATCGCAGGCGGGGCCATCTCGACCATGGCGCAGGCGGGCACCTTCACAGG
ACTGGAGGTTCACTCCCGATGTGCCTCGTCCTCGTACTAGAGGTAGGAAGAGCGCCAGTGAAAATGGCGCTGACCTATCG
ATGCTCAACGCTATATTTGCTGGCGCTGAGCTACTCCAGTGGCTGTGCTGGAGGGATGGACTCGACTGTCGCGGCTAGGT
CGAATCTCAGCGCCAGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis