Browse Element(s) Details


OsAffx.5778.1.S1_at

Description tigr:9636.m01009
TID=OsAffx.5778.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1049011/11heavy metal-associated domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10440OsAffx.29134.1.S1_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10440Os.23329.1.S1_s_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10450Os.5801.1.S1_at11/118+6135784..6138033equilibratiave nucleoside transporter 1, putative, expressed
LOC_Os08g10460NANA8+6139415..6144842retrotransposon protein, putative, unclassified
LOC_Os08g10470Os.7442.2.S1_s_at11/118+6148820..6151471SET domain-containing protein, putative, expressed
LOC_Os08g10480OsAffx.29135.1.S1_at10/118+6152778..6155041copper chaperone, putative, expressed
LOC_Os08g10490OsAffx.5778.1.S1_at11/118+6155655..6156859heavy metal-associated domain containing protein
LOC_Os08g10500Os.11331.1.S1_at11/118+6162010..6162949expressed protein
LOC_Os08g10510Os.19524.1.S1_at11/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510Os.46436.1.S1_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10510OsAffx.26573.1.S1_x_at1/118+6163763..6169452aminotransferase, class III family protein, expressed
LOC_Os08g10520OsAffx.29362.2.S1_s_at11/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.1.S1_x_at10/118+6171521..6172675hypothetical protein
LOC_Os08g10520OsAffx.29362.2.S1_x_at2/118+6171521..6172675hypothetical protein
LOC_Os08g10530OsAffx.5779.1.S1_at11/118+6174816..6175415hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5778.1.S1_at--401--9111Chr08:6156229..6156253 (25 bp)
TGCTGAGGACGGAGGTCCACCCGAC
LOC_Os08g10490
OsAffx.5778.1.S1_at--915--9391Chr08:6156160..6156184 (25 bp)
TCGTCAAGAGGCTCGCCAAGGTCGG
LOC_Os08g10490
OsAffx.5778.1.S1_at--255--531Chr08:6156131..6156155 (25 bp)
ATCGCCGAGGTGATCGTCGTCGCGC
LOC_Os08g10490
OsAffx.5778.1.S1_at--360--891Chr08:6156052..6156076 (25 bp)
AGGCGTCGCCGGACAACGGGAAGAT
LOC_Os08g10490
OsAffx.5778.1.S1_at--472--7591Chr08:6155950..6155974 (25 bp)
GGGCTAGCTCAGCTCGAATCCATGG
LOC_Os08g10490
OsAffx.5778.1.S1_at--676--3711Chr08:6155947..6155971 (25 bp)
CTAGCTCAGCTCGAATCCATGGCGG
LOC_Os08g10490
OsAffx.5778.1.S1_at--263--7311Chr08:6155852..6155876 (25 bp)
GTGCTGCAGCCACCGTACTATGCGG
LOC_Os08g10490
OsAffx.5778.1.S1_at--212--7011Chr08:6155838..6155862 (25 bp)
GTACTATGCGGCGAACTTCACAATG
LOC_Os08g10490
OsAffx.5778.1.S1_at--118--4651Chr08:6155789..6155813 (25 bp)
GCGTACGGTTTTGGTGGCTGCTACC
LOC_Os08g10490
OsAffx.5778.1.S1_at--237--7911Chr08:6155692..6155716 (25 bp)
GGTTCGCCGACGAGTGCTGCATGTA
LOC_Os08g10490
OsAffx.5778.1.S1_at--628--4231Chr08:6155686..6155710 (25 bp)
CCGACGAGTGCTGCATGTACGGCGA
LOC_Os08g10490
Target Sequence 
TGCTGAGGACGGAGGTCCACCCGACGGCCGGCAGGGTGGCGGTCGTCGGCGACGTGGACGCCGGTCGCCTCGTCAAGAGG
CTCGCCAAGGTCGGCAAGATCGCCGAGGTGATCGTCGTCGCGCAGCCGTCGCCGGAGGTGGAGAGGAGGAGGCGCGACGT
CGGCGGCAGCAAGAAGGAGGCGTCGCCGGACAACGGGAAGATGGGCGGCGGCACGGCGCCGAAACACGGCGGCGCCGACG
ACGACAAGCGCGGCGAGACGAATGGCGGCGCAGGGAGCGGGGCTAGCTCAGCTCGAATCCATGGCGGTGGCGACGACGAC
GTGAAGGCGGCCATGTGCTGCTACCACCGGGCGGAGCCGCCGGCCATGGCCGTGCCCGTGCTGCAGCCACCGTACTATGC
GGCGAACTTCACAATGCCGCCGCCGCAGCCGCCGGCGGCGGCGTACGGTTTTGGTGGCTGCTACCACGGGACTCCTTCGC
CGGCGATGGCGCTGTGCCGCCGCGGCCGTATTCCGGTGGTCCGGCCGCAGCCGACCCGGTTCGCCGACGAGTGCTGCATG
TACGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis