Browse Element(s) Details


OsAffx.6522.1.S1_at

Description tigr:9637.m03315
TID=OsAffx.6522.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3889011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38830OsAffx.18050.1.S1_at11/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830OsAffx.30194.1.S1_x_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38830Os.50240.1.S1_at1/119+22302503..22309699Protein kinase domain containing protein
LOC_Os09g38840OsAffx.30194.1.S1_x_at11/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38840OsAffx.30194.2.S1_at1/119+22311184..22314011wall-associated kinase-like 1, putative, expressed
LOC_Os09g38850Os.25404.1.A1_at6/119+22315284..22318271wall-associated kinase-like 1, putative, expressed
LOC_Os09g38860OsAffx.18052.1.S1_at11/119+22318388..22320008hypothetical protein
LOC_Os09g38870OsAffx.6521.1.S1_at11/119+22324708..22327628hypothetical protein
LOC_Os09g38880OsAffx.18053.1.S1_at11/119+22328946..22329182hypothetical protein
LOC_Os09g38890OsAffx.6522.1.S1_at11/119+22331328..22333002hypothetical protein
LOC_Os09g38890Os.49759.1.S1_x_at1/119+22331328..22333002hypothetical protein
LOC_Os09g38900Os.48092.1.A1_at11/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.18.S1_x_at10/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900Os.35344.3.S1_x_at9/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_x_at3/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38900OsAffx.22940.5.S1_at2/119+22333908..22345064transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g38910Os.54238.1.S1_at11/119+22348258..22350996wall-associated kinase-like 1, putative, expressed
LOC_Os09g38920Os.20853.1.S1_at11/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38920OsAffx.22518.1.S1_x_at1/119+22351167..22353066Papain family cysteine protease containing protein, expressed
LOC_Os09g38930OsAffx.18054.1.S1_at11/119+22354475..22356685expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6522.1.S1_at--878--8352Chr09:22332524..22332548 (25 bp)
GGCGGTGGCAGCGAGGACTCCGGCG
LOC_Os09g38890
OsAffx.6522.1.S1_at--52--2171Chr09:22332621..22332645 (25 bp)
ACACCGTCAACCCTATAAGCAAGCA
LOC_Os09g38890
OsAffx.6522.1.S1_at--834--6191Chr09:22332760..22332784 (25 bp)
GAGGCAGTTGAATCTGAAGCCGTAG
LOC_Os09g38890
OsAffx.6522.1.S1_at--335--6631Chr09:22332766..22332790 (25 bp)
GTTGAATCTGAAGCCGTAGCAGGTG
LOC_Os09g38890
OsAffx.6522.1.S1_at--399--8531Chr09:22332843..22332867 (25 bp)
TGGACAGCGAGCTGCTCTAAGGCAG
LOC_Os09g38890
OsAffx.6522.1.S1_at--17--1651Chr09:22332848..22332872 (25 bp)
AGCGAGCTGCTCTAAGGCAGACGGA
LOC_Os09g38890
OsAffx.6522.1.S1_at--230--7471Chr09:22332889..22332913 (25 bp)
GTGGACTTATTAAATCAACGTGGAC
LOC_Os09g38890
OsAffx.6522.1.S1_at--801--2251Chr09:22332900..22332924 (25 bp)
AAATCAACGTGGACAGGTTGGAGAG
LOC_Os09g38890
OsAffx.6522.1.S1_at--1007--4631Chr09:22332942..22332966 (25 bp)
GCGTACTGTAGATTTTGGGCCGTTC
LOC_Os09g38890
OsAffx.6522.1.S1_at--32--6991Chr09:22332944..22332968 (25 bp)
GTACTGTAGATTTTGGGCCGTTCTC
LOC_Os09g38890
OsAffx.6522.1.S1_at--470--1951Chr09:22332946..22332970 (25 bp)
ACTGTAGATTTTGGGCCGTTCTCTA
LOC_Os09g38890
Target Sequence 
GGCGGTGGCAGCGAGGACTCCGGCGGCGGATCCCGCAAGAAGCTCCGCCTCTCGAAGGACCAAGCCGCCGTCCTCGAGGA
CACCTTCAAAGAGCACAACACCGTCAACCCTATAAGCAAGCAAACAAACAATCAAAAAGCAGAAGGCGGCGCTGGCGAGG
CAGTTGAATCTGAAGCCGTAGCAGGTGGAGGTGTGGTTCCAGAACAGGAGGGCGAGAACGAAGCTGAGGCAGACGGAGGT
GGACAGCGAGCTGCTCTAAGGCAGACGGAGGTGGAGGGAGTCAAAGTGGACTTATTAAATCAACGTGGACAGGTTGGAGA
GGGAGGCCGGGCTCTGGGGCGTACTGTAGATTTTGGGCCGTTCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis