Browse Element(s) Details


OsAffx.9246.2.S1_at

Description tigr:9632.m05796
TID=OsAffx.9246.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5927011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59210Os.48373.1.S1_at11/114+35002578..35004921Peroxidase family protein, expressed
LOC_Os04g59220NANA4+35007027..35008424retrotransposon protein, putative, unclassified
LOC_Os04g59230NANA4+35009433..35010639retrotransposon protein, putative, unclassified
LOC_Os04g59240Os.38172.1.S1_x_at3/114+35013638..35014178transposon protein, putative, unclassified
LOC_Os04g59250OsAffx.22848.4.S1_at2/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59250OsAffx.22848.3.S1_x_at2/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59250OsAffx.22848.4.S1_x_at1/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59260Os.264.1.S1_at11/114+35026349..35027661Peroxidase family protein, expressed
LOC_Os04g59270OsAffx.9246.2.S1_at11/114+35028112..35029350hypothetical protein
LOC_Os04g59280Os.31312.2.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59280Os.31312.5.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_x_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59300OsAffx.14477.1.S1_at11/114+35045648..35047185hypothetical protein
LOC_Os04g59300OsAffx.31661.2.S1_at1/114+35045648..35047185hypothetical protein
LOC_Os04g59310Os.53827.1.S1_at11/114+35048224..35051178MAP3K-like protein kinase, putative, expressed
LOC_Os04g59320Os.54119.1.S1_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59320Os.6595.2.S1_s_at10/114+35051975..35057701protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9246.2.S1_at--435--1931Chr04:35028961..35029130 (25 bp)
ACGGCACCGGGACAGCGTATCCGAA
LOC_Os04g59270
OsAffx.9246.2.S1_at--339--3971Chr04:35028954..35029055 (25 bp)
CGGGACAGCGTATCCGAAACGTATC
LOC_Os04g59270
OsAffx.9246.2.S1_at--552--5551Chr04:35028939..35028963 (25 bp)
GAAACGTATCCGTGTCCGTGCGAGT
LOC_Os04g59270
OsAffx.9246.2.S1_at--651--7451Chr04:35028928..35028952 (25 bp)
GTGTCCGTGCGAGTATCCGATACGG
LOC_Os04g59270
OsAffx.9246.2.S1_at--1020--9253Chr09:643439..643463 (25 bp)
TCCGATACGGATACGTGACTTTTGT
NONE
OsAffx.9246.2.S1_at--1152--291Chr04:35028903..35028927 (25 bp)
ATACGTGACTTTTGTGCCGTTTCCA
LOC_Os04g59270
OsAffx.9246.2.S1_at--1095--10391Chr04:35028894..35028918 (25 bp)
TTTTGTGCCGTTTCCAGGTAACACA
LOC_Os04g59270
OsAffx.9246.2.S1_at--713--4031Chr04:35028886..35028910 (25 bp)
CGTTTCCAGGTAACACAGGATGCTG
LOC_Os04g59270
OsAffx.9246.2.S1_at--28--8431Chr04:35028839..35028861 (23 bp)
GGCCGGCGCATGGAGCAATAAAGAT
LOC_Os04g59270
OsAffx.9246.2.S1_at--1115--9731Chr04:35028167..35028191 (25 bp)
TAATAGAGATGCACAGATGGAGCGA
LOC_Os04g59270
OsAffx.9246.2.S1_at--1094--831Chr04:35028151..35028175 (25 bp)
ATGGAGCGAGTATGAGATAATGCCC
LOC_Os04g59270
Target Sequence 
ACGGCACCGGGACAGCGTATCCGAAACGTATCCGTGTCCGTGCGAGTATCCGATACGGATACGTGACTTTTGTGCCGTTT
CCAGGTAACACAGGATGCTGGTGTGGAGCAGAGGTGGAGGCGGAGGCCGGCGCATGGAGCAATAAAGATAAAATTAGAGT
AATAGAGATGCACAGATGGAGCGAGTATGAGATAATGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9246.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis