Browse Element(s) Details


Os.12492.1.S1_at

Description gb:D16499.1
DB_XREF= gi:415314
GEN=ME6
TID=Os.12492.1
CNT=54
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.12492 (NCBI UniGene Cluster)
DEF=Rice mRNA for NADP dependent malic enzyme, complete cds.
PROD=NADP-dependent malic enzyme
FL= gb:AK072842.1 gb:AK121770.1 gb:D16499.1 gb:AK060358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0932011/11NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09280Os.3818.1.S1_a_at11/111+4711519..4715548myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09290OsAffx.9696.1.S1_at7/111+4721172..4721561transposon protein, putative, unclassified
LOC_Os01g09300Os.18077.1.S1_at11/111+4723461..4728045oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g09310Os.54613.1.S1_x_at11/111+4730819..4734408expressed protein
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09340OsAffx.1136.1.S1_at4/111+4750408..4753380hypothetical protein
LOC_Os01g09350NANA1+4755527..4755790hypothetical protein
LOC_Os01g09360OsAffx.23169.1.S1_s_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09360OsAffx.23169.2.S1_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09370Os.9859.3.S1_x_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.3.S1_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.5.S1_x_at8/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.2.S1_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9853.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006108biological_processmalate metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004470molecular_functionmalic enzyme activity
GO:0004473molecular_functionmalate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652molecular_functionoxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12492.1.S1_at--923--8151Chr01:4736905..4736928 (24 bp)
GGAAAGATACATGTGCCAGGCCAGT
LOC_Os01g09320
Os.12492.1.S1_at--1055--4411Chr01:4736794..4736816 (23 bp)
GCCAGTCGAACAATGCCTACATTTT
LOC_Os01g09320
Os.12492.1.S1_at--370--171Chr01:4736774..4736798 (25 bp)
ATTTTCCCTGGATTCGGCCTCGGTG
LOC_Os01g09320
Os.12492.1.S1_at--546--9751Chr01:4736746..4736770 (25 bp)
TAATCTCTGGAGCTGTCCGTGTTCA
LOC_Os01g09320
Os.12492.1.S1_at--75--6511Chr01:4736625..4736741 (25 bp)
GATATGCTTCTAGCTGCCTCGGAAA
LOC_Os01g09320
Os.12492.1.S1_at--672--9131Chr01:4736611..4736727 (25 bp)
TGCCTCGGAAACACTAGCTGATCAG
LOC_Os01g09320
Os.12492.1.S1_at--74--4751Chr01:4736595..4736619 (25 bp)
GCTGATCAGGCCACTCAGGAGAACT
LOC_Os01g09320
Os.12492.1.S1_at--270--8911Chr01:4736569..4736593 (25 bp)
TGAGAAGGGATCGATCTTCCCGCCC
LOC_Os01g09320
Os.12492.1.S1_at--552--5571Chr01:4736531..4736555 (25 bp)
GAAAGATTTCTGCTCGCATTGCCGC
LOC_Os01g09320
Os.12492.1.S1_at--859--71Chr01:4736514..4736538 (25 bp)
ATTGCCGCAAGCGTGGCTGCAAAAG
LOC_Os01g09320
Os.12492.1.S1_at--727--3371Chr01:4736132..4736156 (25 bp)
CACCAGTGTTTCATTCTTTGATCGA
LOC_Os01g09320
Target Sequence 
GGAAAGATACATGTGCCAGGCCAGTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTNGTAATCTCTGGAGC
TGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGG
GATCGATCTTCCCGCCCTTCACAAACATCAGAAAGATTTCTGCTCGCATTGCCGCAAGCGTGGCTGCAAAAGCCTATGAA
CTTGGACTGGCGACCCGGCTGCCTCAACCCAGGGATCTGGAGAAATACGCAGAGAGCTGCATGTACACCCCCGTATACCG
CAGCTACCGGTAACGCCGCGGAGGTCAAATTTTGCAGTAATAAAACCTACCAATGCAGTAGGGGATACTGCTATGTTGTG
TTGCCATTGTCGCCGTTGGCCGTTGCTGCTGCAAGGCATTGTATCTGTCTATATAAATCACCTGTTGTAACGTTATGGAA
GCAATCTCCATGTGTACCACCAGTGTTTCATTCTTTGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis