Browse Element(s) Details


Os.12773.1.S1_at

Description gb:AU165696
DB_XREF= gi:11565060
DB_XREF=AU165696
CLONE=E4108
TID=Os.12773.1
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SerThr specific protein phosphatase 2A B regulatory subunit beta isoform (P0518F01.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4163011/11Protein phosphatase PP2A regulatory subunit B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41580OsAffx.8572.1.S1_s_at11/111+23872400..23873785transposase, putative
LOC_Os01g41580OsAffx.8572.1.S1_at5/111+23872400..23873785transposase, putative
LOC_Os01g41590NANA1+23874092..23875942hypothetical protein
LOC_Os01g41600Os.18250.1.S1_at11/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.28171.1.S1_at4/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.24197.1.S1_x_at1/111+23878818..23881100expressed protein
LOC_Os01g41610Os.11314.1.S1_at11/111+23881114..23884502mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41630Os.12773.1.S1_at11/111+23896960..23903388Protein phosphatase PP2A regulatory subunit B, putative, expressed
LOC_Os01g41640Os.7404.1.S1_a_at11/111+23904085..23907377expressed protein
LOC_Os01g41650Os.36122.3.S1_x_at11/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.36122.1.A1_at9/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41650Os.9674.1.S1_at1/111+23908037..23911608pentatricopeptide, putative, expressed
LOC_Os01g41660Os.36122.2.S1_at11/111+23910829..23912522Phosphatase, putative, expressed
LOC_Os01g41670OsAffx.26442.1.S1_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.1.S1_x_at11/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.2.S1_x_at4/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41670OsAffx.26442.3.S1_x_at3/111+23913981..23915726G-patch domain containing protein
LOC_Os01g41680OsAffx.23624.1.S1_at11/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41680OsAffx.27522.1.S1_x_at1/111+23918280..23919654retrotransposon protein, putative, unclassified
LOC_Os01g41690NANA1+23921898..23928066transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0000166molecular_functionnucleotide binding
GO:0008601molecular_functionprotein phosphatase type 2A regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12773.1.S1_at--801--9991Chr01:23902983..23903007 (25 bp)
TAGCTGCTCCCGGTGAGAAGTGTTT
LOC_Os01g41630
Os.12773.1.S1_at--412--5951Chr01:23902997..23903021 (25 bp)
GAGAAGTGTTTTAACCCCTGGTGCA
LOC_Os01g41630
Os.12773.1.S1_at--833--10331Chr01:23903006..23903030 (25 bp)
TTTAACCCCTGGTGCAGCAGAGCAG
LOC_Os01g41630
Os.12773.1.S1_at--1135--2091Chr01:23903067..23903091 (25 bp)
ACATGCTGTTCTTTTGAGTGCCATA
LOC_Os01g41630
Os.12773.1.S1_at--515--6111Chr01:23903082..23903106 (25 bp)
GAGTGCCATATAGAGCTGTCCAGAG
LOC_Os01g41630
Os.12773.1.S1_at--421--1371Chr01:23903093..23903117 (25 bp)
AGAGCTGTCCAGAGTCCAAGAGGAA
LOC_Os01g41630
Os.12773.1.S1_at--461--5331Chr01:23903115..23903139 (25 bp)
GAAGTGACTCGATCATTCCCGGGAA
LOC_Os01g41630
Os.12773.1.S1_at--834--5571Chr01:23903172..23903196 (25 bp)
GAAAGGCCTGTCTTTCCCTTATAGG
LOC_Os01g41630
Os.12773.1.S1_at--448--9771Chr01:23903216..23903240 (25 bp)
TAAGATTTCTAGTTCGACATTTGGA
LOC_Os01g41630
Os.12773.1.S1_at--10--8851Chr01:23903285..23903309 (25 bp)
TGATCTTCCGTTGTATTCATGTTGA
LOC_Os01g41630
Os.12773.1.S1_at--684--10111Chr01:23903313..23903337 (25 bp)
TATGGTCTTGTAACTTCAGGACAGA
LOC_Os01g41630
Target Sequence 
TAGCTGCTCCCGGTGAGAAGTGTTTTAACCCCTGGTGCAGCAGAGCAGGGAGTTGCTGGTAGTGGTGTTTTTTTTNGGGC
CGGTCACATGCTGTTCTTTTGAGTGCCATATAGAGCTGTCCAGAGTCCAAGAGGAAGTGACTCGATCATTCCCGGGAAGC
AGCTTGATTCTGATTATTTTTTTTCGAGGGGAAAGGCCTGTCTTTCCCTTATAGGTTCATTTAGATTTAAAAGATAAGAT
TTCTAGTTCGACATTTGGAAGGAACAAGAACTGTTGGGAATCTGTGGTTAGATGATAAGGGGATGATCTTCCGTTGTATT
CATGTTGAAATTATGGTCTTGTAACTTCAGGACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis