Browse Element(s) Details

Os.43040.1.S1_at

Description

gb:NM_189297.1
DB_XREF= gi:34905677
GEN=P0475H04.24
TID=Os.43040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.24 (P0475H04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0475H04.24 (P0475H04.24), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g19940	11/11	Negatively light-regulated protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g19894	Os.38395.3.S1_x_at	11/11	1	+	11289443..11302583	transposon protein, putative, Mutator sub-class
LOC_Os01g19894	Os.40855.2.S1_x_at	10/11	1	+	11289443..11302583	transposon protein, putative, Mutator sub-class
LOC_Os01g19894	Os.38395.2.S1_x_at	9/11	1	+	11289443..11302583	transposon protein, putative, Mutator sub-class
LOC_Os01g19894	Os.38395.4.S1_x_at	9/11	1	+	11289443..11302583	transposon protein, putative, Mutator sub-class
LOC_Os01g19894	Os.40855.4.S1_x_at	6/11	1	+	11289443..11302583	transposon protein, putative, Mutator sub-class
LOC_Os01g19894	OsAffx.3900.1.S1_at	5/11	1	+	11289443..11302583	transposon protein, putative, Mutator sub-class
LOC_Os01g19894	OsAffx.21921.1.S1_at	2/11	1	+	11289443..11302583	transposon protein, putative, Mutator sub-class
LOC_Os01g19894	Os.38457.1.S1_s_at	1/11	1	+	11289443..11302583	transposon protein, putative, Mutator sub-class
LOC_Os01g19894	Os.38395.1.S1_at	1/11	1	+	11289443..11302583	transposon protein, putative, Mutator sub-class
LOC_Os01g19894	Os.40855.4.S1_at	1/11	1	+	11289443..11302583	transposon protein, putative, Mutator sub-class
LOC_Os01g19910	OsAffx.11122.1.S1_at	11/11	1	+	11304062..11304592	hypothetical protein
LOC_Os01g19920	OsAffx.22708.1.S1_x_at	5/11	1	+	11306223..11308629	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920	OsAffx.22708.2.S1_x_at	3/11	1	+	11306223..11308629	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920	OsAffx.22708.5.S1_x_at	3/11	1	+	11306223..11308629	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920	OsAffx.22708.2.S1_at	2/11	1	+	11306223..11308629	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19930	OsAffx.22708.3.S1_x_at	9/11	1	+	11309758..11310789	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19930	OsAffx.22708.4.S1_x_at	7/11	1	+	11309758..11310789	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19940	Os.8545.1.S1_at	11/11	1	+	11313360..11316966	Negatively light-regulated protein, putative, expressed
LOC_Os01g19940	Os.49258.1.S1_at	11/11	1	+	11313360..11316966	Negatively light-regulated protein, putative, expressed
LOC_Os01g19940	Os.8545.1.S1_s_at	11/11	1	+	11313360..11316966	Negatively light-regulated protein, putative, expressed
LOC_Os01g19940	Os.43040.1.S1_at	11/11	1	+	11313360..11316966	Negatively light-regulated protein, putative, expressed
LOC_Os01g19940	Os.43040.1.S1_x_at	11/11	1	+	11313360..11316966	Negatively light-regulated protein, putative, expressed
LOC_Os01g19950	OsAffx.11123.1.S1_at	11/11	1	+	11318619..11319530	hypothetical protein
LOC_Os01g19960	Os.46306.1.S1_x_at	6/11	1	+	11322550..11331709	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960	Os.45976.1.S1_at	5/11	1	+	11322550..11331709	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960	Os.45976.1.S1_x_at	3/11	1	+	11322550..11331709	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.43040.1.S1_at--402--1057	1	Chr01:11315161..11315185 (25 bp)	TTCTATGAGGCAGCCATCAAAGATG	LOC_Os01g19940
Os.43040.1.S1_at--828--823	1	Chr01:11315853..11315877 (25 bp)	GGCACTTGGCAAGGTAATACAGAAA	LOC_Os01g19940
Os.43040.1.S1_at--945--985	2	Chr01:11315870..11315894 (25 bp)	TACAGAAAACCAAGAAATGCACATG	LOC_Os01g19940
Os.43040.1.S1_at--40--301	1	Chr01:11315885..11315909 (25 bp)	AATGCACATGTTTTTCAGGGAGTAA	LOC_Os01g19940
Os.43040.1.S1_at--902--35	1	Chr01:11315917..11315941 (25 bp)	ATAATTGGATTTTATGTTGCAACCA	LOC_Os01g19940
Os.43040.1.S1_at--321--793	1	Chr01:11315923..11315947 (25 bp)	GGATTTTATGTTGCAACCAAGTTAC	LOC_Os01g19940
Os.43040.1.S1_at--636--879	1	Chr01:11315931..11315955 (25 bp)	TGTTGCAACCAAGTTACAACCTTTT	LOC_Os01g19940
Os.43040.1.S1_at--198--985	1	Chr01:11315945..11315969 (25 bp)	TACAACCTTTTACCACTATATTCAA	LOC_Os01g19940
Os.43040.1.S1_at--635--1019	1	Chr01:11315963..11315987 (25 bp)	TATTCAAAATTCAGTGCTACCTATT	LOC_Os01g19940
Os.43040.1.S1_at--228--13	1	Chr01:11315971..11315995 (25 bp)	ATTCAGTGCTACCTATTTCTGCAGC	LOC_Os01g19940
Os.43040.1.S1_at--721--907	1	Chr01:11315977..11316001 (25 bp)	TGCTACCTATTTCTGCAGCAAGGCG	LOC_Os01g19940

Target Sequence

TTCTATGAGGCAGCCATCAAAGATGGCAATCGATTGCAGGGATCGTCCCAGAACAAATATGGAGGAATTTCTCCAAAGAA
ACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGGTAATACAGAAAACCA
AGAAATGCACATGTTTTTCAGGGAGTAAAATGAAAATAATTGGATTTTATGTTGCAACCAAGTTACAACCTTTTACCACT
ATATTCAAAATTCAGTGCTACCTATTTCTGCAGCAAGGCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis