Browse Element(s) Details


Os.43040.1.S1_x_at

Description gb:NM_189297.1
DB_XREF= gi:34905677
GEN=P0475H04.24
TID=Os.43040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.24 (P0475H04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0475H04.24 (P0475H04.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1994011/11Negatively light-regulated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19894Os.38395.3.S1_x_at11/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.2.S1_x_at10/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.2.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.4.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_x_at6/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.3900.1.S1_at5/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.21921.1.S1_at2/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38457.1.S1_s_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.1.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19910OsAffx.11122.1.S1_at11/111+11304062..11304592hypothetical protein
LOC_Os01g19920OsAffx.22708.1.S1_x_at5/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.2.S1_x_at3/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.5.S1_x_at3/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.2.S1_at2/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19930OsAffx.22708.3.S1_x_at9/111+11309758..11310789retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19930OsAffx.22708.4.S1_x_at7/111+11309758..11310789retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19940Os.8545.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.49258.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.8545.1.S1_s_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.43040.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.43040.1.S1_x_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19950OsAffx.11123.1.S1_at11/111+11318619..11319530hypothetical protein
LOC_Os01g19960Os.46306.1.S1_x_at6/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_at5/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_x_at3/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43040.1.S1_x_at--401--10571Chr01:11315161..11315185 (25 bp)
TTCTATGAGGCAGCCATCAAAGATG
LOC_Os01g19940
Os.43040.1.S1_x_at--709--511Chr01:11315189..11315641 (25 bp)
ATCGATTGCAGGGATCGTCCCAGAA
LOC_Os01g19940
Os.43040.1.S1_x_at--829--8231Chr01:11315853..11315877 (25 bp)
GGCACTTGGCAAGGTAATACAGAAA
LOC_Os01g19940
Os.43040.1.S1_x_at--39--3011Chr01:11315885..11315909 (25 bp)
AATGCACATGTTTTTCAGGGAGTAA
LOC_Os01g19940
Os.43040.1.S1_x_at--320--7931Chr01:11315923..11315947 (25 bp)
GGATTTTATGTTGCAACCAAGTTAC
LOC_Os01g19940
Os.43040.1.S1_x_at--197--9851Chr01:11315945..11315969 (25 bp)
TACAACCTTTTACCACTATATTCAA
LOC_Os01g19940
Os.43040.1.S1_x_at--227--131Chr01:11315971..11315995 (25 bp)
ATTCAGTGCTACCTATTTCTGCAGC
LOC_Os01g19940
Os.43040.1.S1_x_at--720--9071Chr01:11315977..11316001 (25 bp)
TGCTACCTATTTCTGCAGCAAGGCG
LOC_Os01g19940
Os.43040.1.S1_x_at--340--1492Chr01:11315993..11316017 (25 bp)
AGCAAGGCGCAAGCAACAGCACAAA
LOC_Os01g19940
Os.43040.1.S1_x_at--378--3271Chr01:11316014..11316038 (25 bp)
CAAAAGGCACAACCGAGCCCCTGAA
LOC_Os01g19940
Os.43040.1.S1_x_at--128--8971Chr01:11316035..11316496 (25 bp)
TGAAACCCAAGTTGCAGCGCACGGC
LOC_Os01g19940
Target Sequence 
TTCTATGAGGCAGCCATCAAAGATGGCAATCGATTGCAGGGATCGTCCCAGAACAAATATGGAGGAATTTCTCCAAAGAA
ACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGGTAATACAGAAAACCA
AGAAATGCACATGTTTTTCAGGGAGTAAAATGAAAATAATTGGATTTTATGTTGCAACCAAGTTACAACCTTTTACCACT
ATATTCAAAATTCAGTGCTACCTATTTCTGCAGCAAGGCGCAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACC
CAAGTTGCAGCGCACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43040.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis