Browse Element(s) Details


Os.46334.1.S1_x_at

Description gb:NM_195895.1
DB_XREF= gi:37533149
TID=Os.46334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0045C13.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045C13.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2048010/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g304404/11hypothetical protein
LOC_Os12g321104/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g203604/11hypothetical protein
LOC_Os11g355304/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g228304/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g134303/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g330603/11transposon protein, putative, unclassified
LOC_Os12g141703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g116503/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g260803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g174902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g193302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g262902/11hypothetical protein
LOC_Os05g097162/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g353801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g293201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g260301/11hypothetical protein
LOC_Os06g261101/11hypothetical protein
LOC_Os10g141201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g157101/11transposon protein, putative, unclassified
LOC_Os08g161601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20450Os.7350.1.S1_at11/1110+9961832..9964513MATE efflux family protein, expressed
LOC_Os10g20460OsAffx.30461.1.S1_at10/1110+9965696..9967221hypothetical protein
LOC_Os10g20470Os.5049.1.S1_at11/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20470OsAffx.30725.5.S1_x_at1/1110+9970261..9973000MATE efflux family protein, expressed
LOC_Os10g20480Os.51856.1.S2_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S2_x_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.51856.1.S1_at11/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.46334.1.S1_x_at10/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20480Os.27435.1.S1_x_at3/1110+9986087..9991407transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20490OsAffx.22421.1.S1_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.4.S1_x_at2/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.16244.1.S1_x_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20490OsAffx.22421.2.S1_at1/1110+9991988..9994287transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20500OsAffx.20487.1.S1_s_at11/1110+9998558..10000348hypothetical protein
LOC_Os10g20500OsAffx.20487.2.S1_at10/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.52284.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20500Os.29966.2.S1_x_at1/1110+9998558..10000348hypothetical protein
LOC_Os10g20510Os.25521.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510OsAffx.18309.1.S1_at11/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_x_at10/1110+10005999..10011288expressed protein
LOC_Os10g20510Os.25521.2.S1_at9/1110+10005999..10011288expressed protein
LOC_Os10g20520OsAffx.30462.1.S1_at11/1110+10012486..10012787hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46334.1.S1_x_at--682--51713Chr12:19336317..19336341 (25 bp)
GCAAGAGGGCGAAATCTTCTCCACC
LOC_Os12g32110
Os.46334.1.S1_x_at--835--5171Chr10:9987344..9987368 (25 bp)
GCAAGGCGCCATTAGCTGCTCAAAA
LOC_Os10g20480
Os.46334.1.S1_x_at--635--8991Chr10:9987328..9987352 (25 bp)
TGCTCAAAAGCCTCCGACCGAATTC
LOC_Os10g20480
Os.46334.1.S1_x_at--488--7811Chr10:9987286..9987310 (25 bp)
GGTCGGTGACGATGCCTTATTCAAG
LOC_Os10g20480
Os.46334.1.S1_x_at--1009--10191Chr10:9987269..9987293 (25 bp)
TATTCAAGATGGACCCTGCATGCAA
LOC_Os10g20480
Os.46334.1.S1_x_at--368--7712Chr10:9987098..9987122 (25 bp)
GGGTGCGAGCGATCGATACCAACCT
LOC_Os10g20480
Os.46334.1.S1_x_at--173--11315Chr12:21480787..21480888 (25 bp)
AGTGCTACTCCTTGTTAACCTGGAA
LOC_Os12g35380
Os.46334.1.S1_x_at--459--7311Chr12:19336826..19336850 (25 bp)
ATGTTGCCTTACTCGATCCAGCTGT
LOC_Os12g32110
Os.46334.1.S1_x_at--122--2591Chr10:9986897..9986921 (25 bp)
AACGATCGAGCCAACATTGTGGACT
LOC_Os10g20480
Os.46334.1.S1_x_at--333--29311Chr12:19336903..19336926 (24 bp)
AAGGACTGCTTATTTGCCCGTCAAA
LOC_Os12g32110
Os.46334.1.S1_x_at--893--10434Chr11:14552570..14552590 (21 bp)
TTATGTGTGCCTACAATCAACAGAA
LOC_Os11g26290
Target Sequence 
GCAAGAGGGCGAAATCTTCTCCACCCAAGCTTGACACACGCAGAAAAGCTGTTGGAACGGGGAGAGGAAAAGGAAAGGTG
CCATTAGCCCCAAAAAAGCTTGATCTTGGCAAGGCGCCATTAGCTGCTCAAAAGCCTCCGACCGAATTCACATTGGGCAT
GCCATTGGTCGGTGACGATGCCTTATTCAAGATGGACCCTGCATGCAAGGAGTTGCACGGGGTGCGAGCGATCGATACCA
ACCTCCTTGAGTGCTACTCCTTGTTAACCTGGAAGCATGTCCATCATAAAGCACCCCATGTTGCCTTACTCGATCCAGCT
GTCGTCAATGAGACAACGCTGAAAAACGATCGAGCCAACATTGTGGACTATATCAAGGACTGCTTATTTGCCCGTCAAAG
ACAAGGACTTCATTATGTGTGCCTACAATCAACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46334.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis