Browse Element(s) Details

Os.4754.1.S1_at

Description

gb:AK058356.1
DB_XREF= gi:32968374
TID=Os.4754.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs D47620(S13223),AU029621(E31157) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana chromosome II BAC T32F6 genomic sequence, unknown protein. (AC005700) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-E12, full insert sequence.
FL= gb:AK058356.1 gb:AK102880.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08005	11/11	galactosyltransferase family protein, putative, expressed
LOC_Os06g07905	11/11	galactosyltransferase family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07923	Os.27542.1.A1_at	11/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	Os.20904.1.S1_at	8/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	OsAffx.19206.1.S1_x_at	2/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07932	Os.15663.1.S1_at	5/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07932	Os.10521.1.S1_at	2/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07941	Os.27693.1.S1_at	11/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07941	OsAffx.22569.1.S1_x_at	1/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07960	Os.3545.1.S1_at	11/11	6	+	3860286..3864403	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07969	Os.3546.1.S1_at	11/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07969	OsAffx.27501.1.S1_at	9/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07978	Os.4216.1.S1_a_at	11/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.2.S1_x_at	6/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.1.S1_at	1/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07987	OsAffx.27499.3.S1_x_at	11/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	OsAffx.13617.1.S1_x_at	2/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	Os.51833.1.S1_x_at	1/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07996	OsAffx.27499.2.S1_at	11/11	6	+	3874485..3877204	ribosomal protein S15 containing protein
LOC_Os06g08005	Os.4754.1.S1_at	11/11	6	+	3877872..3882078	galactosyltransferase family protein, putative, expressed
LOC_Os06g08014	OsAffx.22569.2.S1_x_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.2.S1_at	11/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08014	OsAffx.22569.1.S1_x_at	7/11	6	+	3883193..3884868	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.27542.1.A1_at	11/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	Os.20904.1.S1_at	8/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08023	OsAffx.19206.1.S1_x_at	2/11	6	+	3888191..3891360	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08032	Os.15663.1.S1_at	5/11	6	+	3892673..3894157	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g08041	Os.27693.1.S1_at	11/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08041	OsAffx.22569.1.S1_x_at	1/11	6	+	3895491..3897525	iron/ascorbate-dependent oxidoreductase, putative
LOC_Os06g08060	Os.54275.1.S1_at	11/11	6	+	3899489..3902057	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g08070	Os.41695.15.S1_s_at	11/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.5.S1_x_at	8/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.2.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.3.S1_x_at	4/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class
LOC_Os06g08070	Os.41695.4.S1_x_at	3/11	6	+	3902683..3909686	transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups
GO:0016758	molecular_function	transferase activity, transferring hexosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4754.1.S1_at--718--439	2	Chr06:3879613..3879637 (25 bp)	GCCAAGGACTGTACATGGGTTGCAT	LOC_Os06g08005
Os.4754.1.S1_at--142--241	2	Chr06:3880757..3880776 (20 bp)	AAAACGTATTTTCGCCATGCTTCCG	LOC_Os06g08005
Os.4754.1.S1_at--736--63	2	Chr06:3880768..3880792 (25 bp)	ATGCTTCCGGTGCTTTGTTTATCCT	LOC_Os06g08005
Os.4754.1.S1_at--569--1043	2	Chr06:3880786..3880810 (25 bp)	TTATCCTCTCTAACAATTTGGCACG	LOC_Os06g08005
Os.4754.1.S1_at--545--935	2	Chr06:3881326..3881350 (25 bp)	TCGCTACAGAGCTATGCCCATGATG	LOC_Os06g08005
Os.4754.1.S1_at--543--29	2	Chr06:3881384..3881408 (25 bp)	ATACTACTTATGTTGATGACGACCG	LOC_Os06g08005
Os.4754.1.S1_at--373--69	2	Chr06:3881399..3881423 (25 bp)	ATGACGACCGTTTGTGCTGCGGCAG	LOC_Os06g08005
Os.4754.1.S1_at--860--133	2	Chr06:3881525..3881549 (25 bp)	AGAGAAAGTATGTTCCCACGCATGA	LOC_Os06g08005
Os.4754.1.S1_at--548--1001	2	Chr06:3881552..3881576 (25 bp)	TAGCAGCACGCATGGTTATGACGGT	LOC_Os06g08005
Os.4754.1.S1_at--911--1039	2	Chr06:3881615..3881639 (25 bp)	TTTTGTATACACCAAGCGGCTTCTG	LOC_Os06g08005
Os.4754.1.S1_at--1041--17	2	Chr06:3881660..3881684 (25 bp)	ATTTCAAACGCTGCTTTATCCGATC	LOC_Os06g08005

Target Sequence

GCCAAGGACTGTACATGGGTTGCATGAAATCAGGAGGTGTTGTAAGTGAAGAGGGTCAACAATGGTATGAACCTGAATGG
TGGAAGTTTGGAGATTCAAAAACGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTA
CATTAACATAAACAGTGCATCGCTACAGAGCTATGCCCATGATGACATATCAGTAGGTTCATGGATGATGGGGCTGAATA
CTACTTATGTTGATGACGACCGTTTGTGCTGCGGCAGTTCTAGACAAGAGAAAGTATGTTCCCACGCATGAGTTAGCAGC
ACGCATGGTTATGACGGTGGTGTCCTGATGAAGAGGTGACGCTGTATATTTTGCCATTTTGTATACACCAAGCGGCTTCT
GGAATGAAAAATAGATACATCATTTCAAACGCTGCTTTATCCGATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis