Browse Element(s) Details


Os.49258.1.S1_at

Description gb:AK062613.1
DB_XREF= gi:32972631
TID=Os.49258.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-A11, full insert sequence.
FL= gb:AK062613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1994011/11Negatively light-regulated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19894Os.38395.3.S1_x_at11/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.2.S1_x_at10/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.2.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.4.S1_x_at9/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_x_at6/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.3900.1.S1_at5/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894OsAffx.21921.1.S1_at2/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38457.1.S1_s_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.38395.1.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19894Os.40855.4.S1_at1/111+11289443..11302583transposon protein, putative, Mutator sub-class
LOC_Os01g19910OsAffx.11122.1.S1_at11/111+11304062..11304592hypothetical protein
LOC_Os01g19920OsAffx.22708.1.S1_x_at5/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.2.S1_x_at3/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.5.S1_x_at3/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19920OsAffx.22708.2.S1_at2/111+11306223..11308629retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19930OsAffx.22708.3.S1_x_at9/111+11309758..11310789retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19930OsAffx.22708.4.S1_x_at7/111+11309758..11310789retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g19940Os.8545.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.49258.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.8545.1.S1_s_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.43040.1.S1_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19940Os.43040.1.S1_x_at11/111+11313360..11316966Negatively light-regulated protein, putative, expressed
LOC_Os01g19950OsAffx.11123.1.S1_at11/111+11318619..11319530hypothetical protein
LOC_Os01g19960Os.46306.1.S1_x_at6/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_at5/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_x_at3/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49258.1.S1_at--71--1211Chr01:11313909..11313933 (25 bp)
AGTATTTATATTATGCCTCTGGTGA
LOC_Os01g19940
Os.49258.1.S1_at--40--211Chr01:11313975..11313999 (25 bp)
ATTTCCGTTCATAACTCTCAACCAA
LOC_Os01g19940
Os.49258.1.S1_at--371--131Chr01:11314001..11314025 (25 bp)
ATTCAGGTGGGCATTAGCAATTAGA
LOC_Os01g19940
Os.49258.1.S1_at--585--2291Chr01:11314038..11314062 (25 bp)
AAATGATCTCCGTTACATGGCCAAA
LOC_Os01g19940
Os.49258.1.S1_at--711--3471Chr01:11314053..11314077 (25 bp)
CATGGCCAAAACTCTAGCAACTTAG
LOC_Os01g19940
Os.49258.1.S1_at--228--9711Chr01:11314204..11314228 (25 bp)
TCAAAATTTTCTTATCTGCCGCCAC
LOC_Os01g19940
Os.49258.1.S1_at--201--6851Chr01:11314230..11314254 (25 bp)
GTTTCCCGGCGTTGATTTTGGGATG
LOC_Os01g19940
Os.49258.1.S1_at--593--8151Chr01:11314254..11314278 (25 bp)
GGAAACAACACCAAGTCACCGTGAA
LOC_Os01g19940
Os.49258.1.S1_at--913--8972Chr01:11314275..11314299 (25 bp)
TGAACGTCACGTGGCATTTGAAAAC
LOC_Os01g19940
Os.49258.1.S1_at--557--991Chr01:11314367..11314391 (25 bp)
AGGAGGCCAATTTGGTCTCGCCGTT
LOC_Os01g19940
Os.49258.1.S1_at--746--9331Chr01:11314384..11314408 (25 bp)
TCGCCGTTTGTTGCTTTCATGAGAA
LOC_Os01g19940
Target Sequence 
AGTATTTATATTATGCCTCTGGTGAAGNGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAA
CTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTA
GCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTT
GTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCAC
CGTTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACCGTGAACGTCACGTGGCATTTGAAAACTCAGGTCAG
GGAAAGGAACCCAACANTACAATTATACCGACTTGGAAACCAAATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCC
GTTTGTTGCTTTCATGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis